Non-Coding RNA Search

Ss1.1-rspl01_o21.5

Sequence:


               
               TGGAAATGGCCGTGGCGTACTGGAATCTGGTATTATCTGGAAGGTTTAAATTTCTAGACC
TCTGGAACACCTTCTTGCTGGAACGCCACAAAAGATCAATCCCAAGGGACACCTGGAACC
TTCTGCTAGACTTTGGAAATATGATTGCAGATGACATGTCTAACTATGACGAAGAAGGAG
CGTGGCCTGTTCTCATAGATGATTTCGTGGAATTCGCACGGCCGGTGGTCACGGGGGGTA
AAGGCAGCCCTTTGTAGGCAGAAGATCGGGGTGAAGCGAGAGGAAAGGTGAGCTCGCCCT
GCAGGAGCTGCTGGTCAGGTGTGTGGCTCACGCGGGCAGCCGACCCGTCCTGAACTGCAG
GCCCGCGCCCCGCCTGGAGTCGCTGCCACCGCGGCTCGTGGGCGTCTGCAGTCGGGGCCT
CACCGCTGCTGTAGGAGCTTGTGCGTGACTCCTGTGTTGGTGACAGGAGGCCGACGCCAG
TGCCCACCGCTTGCTGAAGAGACAGAGGGTCAGGCTGCCGAAAACGTGCCGTAACTGAGA
GGGTCGTCATGGGTTCTGACCCCTTGGAACTCGGTGCCAGGGCTGGGATTTGTATTTTTT
GAATCGTCAGACGTCTGTGTTTCTTGGCGGTTTTTGTTTTCCCCAGCTGTCCCTCTGGTT
GTGTTGCTGCGTGCACGGCCCGGCCAGGGCACGCATGACATCTGCAAGCCTCAGCCTAAG
CTGTCCGCGCGTCCCTTTACCCTGATAACGTCCGTTGACCTTCCTAGGGAGCTTCATAAA
GTGTGCTCTTTTAAGAATATGTTTCATTGCCCCTAAAAAGAAGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAATGGCCGTGGCGTACTGGAATCTGGTATTATCTGGAAGGTTTAAATTTCTAGACC
TCTGGAACACCTTCTTGCTGGAACGCCACAAAAGATCAATCCCAAGGGACACCTGGAACC
TTCTGCTAGACTTTGGAAATATGATTGCAGATGACATGTCTAACTATGACGAAGAAGGAG
CGTGGCCTGTTCTCATAGATGATTTCGTGGAATTCGCACGGCCGGTGGTCACGGGGGGTA
AAGGCAGCCCTTTGTAGGCAGAAGATCGGGGTGAAGCGAGAGGAAAGGTGAGCTCGCCCT
GCAGGAGCTGCTGGTCAGGTGTGTGGCTCACGCGGGCAGCCGACCCGTCCTGAACTGCAG
GCCCGCGCCCCGCCTGGAGTCGCTGCCACCGCGGCTCGTGGGCGTCTGCAGTCGGGGCCT
CACCGCTGCTGTAGGAGCTTGTGCGTGACTCCTGTGTTGGTGACAGGAGGCCGACGCCAG
TGCCCACCGCTTGCTGAAGAGACAGAGGGTCAGGCTGCCGAAAACGTGCCGTAACTGAGA
GGGTCGTCATGGGTTCTGACCCCTTGGAACTCGGTGCCAGGGCTGGGATTTGTATTTTTT
GAATCGTCAGACGTCTGTGTTTCTTGGCGGTTTTTGTTTTCCCCAGCTGTCCCTCTGGTT
GTGTTGCTGCGTGCACGGCCCGGCCAGGGCACGCATGACATCTGCAAGCCTCAGCCTAAG
CTGTCCGCGCGTCCCTTTACCCTGATAACGTCCGTTGACCTTCCTAGGGAGCTTCATAAA
GTGTGCTCTTTTAAGAATATGTTTCATTGCCCCTAAAAAGAAGTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57162458|emb|CAI39777.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57162458|emb|CAI39777.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               176-379, gnl|bosTau2|chr12 (48252514-48252722)
               

               
               176-379, gnl|Hg17|chr13 (113160426-113160199)
               

               
               176-379, gnl|Mm7|chr8 (13232198-13231984)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-379, gnl|bosTau2|chr12 (48252514-48252722)
               

               
               176-379, gnl|Hg17|chr13 (113160426-113160199)
               

               
               176-379, gnl|Mm7|chr8 (13232198-13231984)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mas (0.210305)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	176-379, gnl\|bosTau2\|chr12 (48252514-48252722)
	176-379, gnl\|Hg17\|chr13 (113160426-113160199)
	176-379, gnl\|Mm7\|chr8 (13232198-13231984)

	mas (0.210305)
	col (0.195008)
	ill (0.175593)
	fhi (0.169578)
	spl (0.143184)
	ese (0.126502)
	med (0.116252)
	ecc (0.115035)