Non-Coding RNA Search

Ss1.1-rspl02_c5.5

Sequence:


               
               AATACGTACGGTGGCCATGCTGGTGTTATAAGTAAAGTTTCGACAAGCTTTGGAAATAAC
ACCTCCGCATTTATAGATGTCATGGATTTAATAAGTAGTTATTTATGTTTTAATTAACAT
CTGATCTAAACCATCAGTATGCATTTTTACAGGAATTAGCATATGAATATTTCAGTATCA
TAAATTGTTGGGAAAGGTTGCTACAGGTAAACTATTTCAGCTCTAAGATATTGGCCAAAT
AGTTTACAATTCAAAGATTATATAAAGAGGTGCTTTTTTTTTTTTCTTTAAAACTTTTTC
TTAATTAAGACTTTATTCATGCCAAAGTTAATGGGGAAAAAAGCTCAAAACTAGTTGAGG
ATCACTAGAGGCAAAACTACCCATAGTCTACATAGTTTCATTTACTATTAAGTGGAATCA
GGTAAATTTTATGCCAGTAAGAGCCTAACTCACATTTTTTATGTCTGCATGTTTGATACT
ATTTTATTAAATAGTATCATGCTAGTGCCAGGATTTACTAAATGTCTTAAAATTGGCCCA
TTGGGCCTGTGCAAGTTTAGAAAAGATTGATTCTCAATGCATAAACAAAATATATTGATT
ATAGTTGGAATAGTTTAGTTTGAAAATAAATTTTGATGTTGTAAATTCTTCAGAGGATTC
CATAGTTAACACTGATGACTTCCTATTAAAAACTTTGTCTGCAGTTGGAGAGGCCTAAGA
CCATGACTTTCAAAGTAAATTGTTGTATTTGGATCCTAGCAAGTGTGGAGATGTCACAGA
TGTGATCTTAAGTAAGAAAATCAAATTGGATTAACTAAGCATTTGAGCACTGTAAATGAT
TTTTCATATTTTCAGGATAAAACCTTTGCTTCATTTCTGGTCCCTTTATAATGCCAACAT
CTTTGGCTAAAGAAATGAACTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATACGTACGGTGGCCATGCTGGTGTTATAAGTAAAGTTTCGACAAGCTTTGGAAATAAC
ACCTCCGCATTTATAGATGTCATGGATTTAATAAGTAGTTATTTATGTTTTAATTAACAT
CTGATCTAAACCATCAGTATGCATTTTTACAGGAATTAGCATATGAATATTTCAGTATCA
TAAATTGTTGGGAAAGGTTGCTACAGGTAAACTATTTCAGCTCTAAGATATTGGCCAAAT
AGTTTACAATTCAAAGATTATATAAAGAGGTGCTTTTTTTTTTTTCTTTAAAACTTTTTC
TTAATTAAGACTTTATTCATGCCAAAGTTAATGGGGAAAAAAGCTCAAAACTAGTTGAGG
ATCACTAGAGGCAAAACTACCCATAGTCTACATAGTTTCATTTACTATTAAGTGGAATCA
GGTAAATTTTATGCCAGTAAGAGCCTAACTCACATTTTTTATGTCTGCATGTTTGATACT
ATTTTATTAAATAGTATCATGCTAGTGCCAGGATTTACTAAATGTCTTAAAATTGGCCCA
TTGGGCCTGTGCAAGTTTAGAAAAGATTGATTCTCAATGCATAAACAAAATATATTGATT
ATAGTTGGAATAGTTTAGTTTGAAAATAAATTTTGATGTTGTAAATTCTTCAGAGGATTC
CATAGTTAACACTGATGACTTCCTATTAAAAACTTTGTCTGCAGTTGGAGAGGCCTAAGA
CCATGACTTTCAAAGTAAATTGTTGTATTTGGATCCTAGCAAGTGTGGAGATGTCACAGA
TGTGATCTTAAGTAAGAAAATCAAATTGGATTAACTAAGCATTTGAGCACTGTAAATGAT
TTTTCATATTTTCAGGATAAAACCTTTGCTTCATTTCTGGTCCCTTTATAATGCCAACAT
CTTTGGCTAAAGAAATGAACTGAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-919, gnl|bosTau2|chr21 (36500220-36499308)
               

               
               1-919, gnl|Hg17|chr14 (91597626-91595432)
               

               
               1-919, gnl|Mm7|chr12 (99416065-99414961)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-919, gnl|bosTau2|chr21 (36500220-36499308)
               

               
               1-919, gnl|Hg17|chr14 (91597626-91595432)
               

               
               1-919, gnl|Mm7|chr12 (99416065-99414961)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)

	1-919, gnl\|bosTau2\|chr21 (36500220-36499308)
	1-919, gnl\|Hg17\|chr14 (91597626-91595432)
	1-919, gnl\|Mm7\|chr12 (99416065-99414961)