Non-Coding RNA Search

Ss1.1-rspl02_d20.5

Sequence:


               
               CTGGGAGGTTGCTCCTTCTTGTGGAAGCTTGTTTTTGCCAGTCCGGGGCGCGACCCTGAG
GCTCGAGCTAGGGAGGCGTCCGCGGCCAAGATGACCCAGGCGGAGAAAGGGGACGCAGAG
AACGGAAAGGAGAAGGGTGGGGAAAAGGAGAAGGAACAGCGCGGCGTGAAGCGACCCATC
GTGCCCGCGTTGGTGCCGGAGTCGCTACAGGAGCAAATCCAGAGCAACTTCATCGTTGTC
ATACATCCAGGTTCAACAACTCTGAGGATTGGTCGAGCCACAGACACGCTTCCTGCCAGC
ATTCCTCACGTCATTGCACGAAGACATAAACAACAAGGGCAGCCTCTATATAAGGACAAC
TGGCTCCTAAGGGAAGGACTAAATAAACCTGAAAGTAACGAACAAAGACAAAATGGCCTT
AAAATGGTGGATCAAGCAATATGGTCTAAAAAGATGTCAAATGGTACAAGACGAATTCCT
GTGTCTCCTGAGCAGGCACGTTCCTACAACAAGCAGATGCGACCTGCGATTTTAGATCAC
TGCTCTGGAAATAAGTGGACAAACACATCTCATCACCCTGAATTTTTGGTAGGAGAAGAG
GCCTTATATGTTAATCCATTGGACTGTTACAATATTCACTGGCCCATCAGAAGAGGCCAG
TTAAATATTCACCAGGGACCTGGGGGCTCTCTTACAGCTGTTCTGGCTGATATTGAAGTA
ATATGGTCTCATGCAATACAAAAATACTTGGAAATCCCACTGAAAGATTTAAAGTATTAT
AGGTGTATCTTGTTAATTCCTGATATCTATAATAAACAGCATGTGAAAGAATTAGTGAAT
ATGATCCTAATGAAGATGGGTTTTTCAGGGATTGTGGTCCATCANGAGTCTGTGTGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGAGGTTGCTCCTTCTTGTGGAAGCTTGTTTTTGCCAGTCCGGGGCGCGACCCTGAG
GCTCGAGCTAGGGAGGCGTCCGCGGCCAAGATGACCCAGGCGGAGAAAGGGGACGCAGAG
AACGGAAAGGAGAAGGGTGGGGAAAAGGAGAAGGAACAGCGCGGCGTGAAGCGACCCATC
GTGCCCGCGTTGGTGCCGGAGTCGCTACAGGAGCAAATCCAGAGCAACTTCATCGTTGTC
ATACATCCAGGTTCAACAACTCTGAGGATTGGTCGAGCCACAGACACGCTTCCTGCCAGC
ATTCCTCACGTCATTGCACGAAGACATAAACAACAAGGGCAGCCTCTATATAAGGACAAC
TGGCTCCTAAGGGAAGGACTAAATAAACCTGAAAGTAACGAACAAAGACAAAATGGCCTT
AAAATGGTGGATCAAGCAATATGGTCTAAAAAGATGTCAAATGGTACAAGACGAATTCCT
GTGTCTCCTGAGCAGGCACGTTCCTACAACAAGCAGATGCGACCTGCGATTTTAGATCAC
TGCTCTGGAAATAAGTGGACAAACACATCTCATCACCCTGAATTTTTGGTAGGAGAAGAG
GCCTTATATGTTAATCCATTGGACTGTTACAATATTCACTGGCCCATCAGAAGAGGCCAG
TTAAATATTCACCAGGGACCTGGGGGCTCTCTTACAGCTGTTCTGGCTGATATTGAAGTA
ATATGGTCTCATGCAATACAAAAATACTTGGAAATCCCACTGAAAGATTTAAAGTATTAT
AGGTGTATCTTGTTAATTCCTGATATCTATAATAAACAGCATGTGAAAGAATTAGTGAAT
ATGATCCTAATGAAGATGGGTTTTTCAGGGATTGTGGTCCATCANGAGTCTGTGTGTGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               44-213, gnl|bosTau2|chr22 (35848001-35848171)
               

               
               44-213, gnl|Hg17|chr3 (53891216-53891046)
               

               
               44-213, gnl|Mm7|chr14 (27408127-27408300)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-213, gnl|bosTau2|chr22 (35848001-35848171)
               

               
               44-213, gnl|Hg17|chr3 (53891216-53891046)
               

               
               44-213, gnl|Mm7|chr14 (27408127-27408300)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.286369)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)

	44-213, gnl\|bosTau2\|chr22 (35848001-35848171)
	44-213, gnl\|Hg17\|chr3 (53891216-53891046)
	44-213, gnl\|Mm7\|chr14 (27408127-27408300)