Ss1.1-rspl02_f21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCGGCACCCGGCGGCGCGGGCCCGGCGGCGGCGGCGGCGGCGGCCGAGGCGGAGCCCGC GAAGGAGGAGCCGCCGGCTCGCTCATCACTGTACCAGGAGAAGGCGAACCTGTACCCGCC GAGCAACACGCCGGGCGAGGGACTGAGCCACGGCGGCGGCCTGCGGCCCAACGGGCAGAC GAAGCCGCTGCCGGCGCTGAAGCTGGCGCTGGAGTACATCGTGCCGTGCATGAACAAGCA CGGCATCTGCGTGGTGGATGACTTCCTGGGCAAGGAGACGGGGCAGCAGATCGGCGACGA GGTGCGCGCCCTGCACGACACCGGCAAGTTCACGGACGGGCAGCTGGTCAGCCAGAAGAG CGACTCGTCCAAGGACATCCGCGGCGATAAGATCACCTGGATCGAGGGCAAGGAGCCCGG CTGCGAAACCATCGGGCTGCTCATGAGCAGCATGGACGACCTGATCCGCCACTGTAACGG CAAACTGGGCAACTACAAAATCAATGGCCGGACGAAAGCCATGGTCGCTTGTTATCCAGG CAACGGAACAGGTTACGTACGTCACGTTGATAATCCAAATGGAGATGGAAGATGTGTGAC TTGTATATATTATCTTAATAAAGACTGGGATGCCAAGGTAAGTGGAGGTATACTTCGAAT TTTTCCAGAAGGCAAAGCCCAGTTTGCTGACATTGAACCCAAATTTGATAGACTGCTGTT TTTCTGGTCTGACCGTCGCAACCCTCATGAAGTACAACCAGCATATGCTACAAGGTACGC AATAACTGTTTGGTATTTTGATGCAGATGAGAGAGCACGAGCTAAAGTAAAATATCTAAC AGGTGAAAAAGGTGTGAGGGTTGAACTCAATAAACCTTCCGATTCAGTCAGTAAAGACGT CTTATAGAGCCTTTGATCCAGCAATACCCCACTTCACCTTCAGTAATTATGACGCTCTCA GTTAACTCGTGAATGCAAATACATGGGATAAAGAAAAGTAGACAGCCGGTTGGCAATTTA AGGAAACAGAAACAACTTTTTGTGTTGCATCAAAAGGAAGATTTTGACTCTGTGGCTTTG TACTGCATGACTGACTCCAAACCTGCGGTTGCTTATGGGAAGGATATAAGCTGTCAGCTG AAAGTGATATTTACATCTGGACGTGAAATAAGTGCCCTAGGTAGAAGTGTTTCATTCTTA TATTTTGCCAGATCTGTCATCTAGCTGAGTTCATTTCATCTCTCCCTTTTTTATATAGTC AAGTTTGAATTTGAAGTAATTTTTGTATGATCAGGTACAATTTATCAAAACTGAATTGAG AAAAAAAAATTACAGTATTATTCCCCAAAATAGCATCAATCTATTTTTGTAAACCTCTTC GTACTATTAAATTTTGCCCTAAAAGACCTCTTCTAATGATTGTTGCCAGTGACTGATGAT TACTTTGATTCTCTTTTTACTTAAAATAAGAAAAGGAGCACTTTAATCACCAACCGAAAA GTCAGATTGTTTCCTTGTCTTGTCTTACACTAATTTGAACTCTTTTAACGATTGCTGCTC TTGTTGTTTTTGACATTGTTAATAGTAACACAACAGTAAAACCGTCACCATTTACTACCA ATTACTTTTAGTTTCTGTTGTATAAGAAAAAATACACAGTAAGGTTTTATCTTTAAGTTA CATTTAAAAAAACAGACAAACAAAAAACGAAAGTGGCTGGCACTCGATGAACCTGAGGTT ATCCTCTGCATCAAGTTCCCAAGGTAAAGGGCTTTCTTATGCTTTCAGGTAAAGCCTATA GACATAGAAGTTACTGTCCCCATTCCTAAGACTTTTCCTTTTGCTTCCCGTCAAGTTGAT TGTCCGTTTAATTTTGCTGTTATGTGTTCTTCCTACTCCCGTGCCCGTCTGATCCGCAGA TCAGAACCTTGTTTCTGTCGGGCGGCACCCAGGGGAGCCTGCGCACATCCAGACGGACCT GTGTTACCACAGACGTAACGTTAGCGACCCCTCAGACCGCGGCTGACCATTCCCCACGCG TGACCCGGCCTCTCTATCAGGACTGAAAGTGTAGGTTTAGCAGAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCGGCACCCGGCGGCGCGGGCCCGGCGGCGGCGGCGGCGGCGGCCGAGGCGGAGCCCGC GAAGGAGGAGCCGCCGGCTCGCTCATCACTGTACCAGGAGAAGGCGAACCTGTACCCGCC GAGCAACACGCCGGGCGAGGGACTGAGCCACGGCGGCGGCCTGCGGCCCAACGGGCAGAC GAAGCCGCTGCCGGCGCTGAAGCTGGCGCTGGAGTACATCGTGCCGTGCATGAACAAGCA CGGCATCTGCGTGGTGGATGACTTCCTGGGCAAGGAGACGGGGCAGCAGATCGGCGACGA GGTGCGCGCCCTGCACGACACCGGCAAGTTCACGGACGGGCAGCTGGTCAGCCAGAAGAG CGACTCGTCCAAGGACATCCGCGGCGATAAGATCACCTGGATCGAGGGCAAGGAGCCCGG CTGCGAAACCATCGGGCTGCTCATGAGCAGCATGGACGACCTGATCCGCCACTGTAACGG CAAACTGGGCAACTACAAAATCAATGGCCGGACGAAAGCCATGGTCGCTTGTTATCCAGG CAACGGAACAGGTTACGTACGTCACGTTGATAATCCAAATGGAGATGGAAGATGTGTGAC TTGTATATATTATCTTAATAAAGACTGGGATGCCAAGGTAAGTGGAGGTATACTTCGAAT TTTTCCAGAAGGCAAAGCCCAGTTTGCTGACATTGAACCCAAATTTGATAGACTGCTGTT TTTCTGGTCTGACCGTCGCAACCCTCATGAAGTACAACCAGCATATGCTACAAGGTACGC AATAACTGTTTGGTATTTTGATGCAGATGAGAGAGCACGAGCTAAAGTAAAATATCTAAC AGGTGAAAAAGGTGTGAGGGTTGAACTCAATAAACCTTCCGATTCAGTCAGTAAAGACGT CTTATAGAGCCTTTGATCCAGCAATACCCCACTTCACCTTCAGTAATTATGACGCTCTCA GTTAACTCGTGAATGCAAATACATGGGATAAAGAAAAGTAGACAGCCGGTTGGCAATTTA AGGAAACAGAAACAACTTTTTGTGTTGCATCAAAAGGAAGATTTTGACTCTGTGGCTTTG TACTGCATGACTGACTCCAAACCTGCGGTTGCTTATGGGAAGGATATAAGCTGTCAGCTG AAAGTGATATTTACATCTGGACGTGAAATAAGTGCCCTAGGTAGAAGTGTTTCATTCTTA TATTTTGCCAGATCTGTCATCTAGCTGAGTTCATTTCATCTCTCCCTTTTTTATATAGTC AAGTTTGAATTTGAAGTAATTTTTGTATGATCAGGTACAATTTATCAAAACTGAATTGAG AAAAAAAAATTACAGTATTATTCCCCAAAATAGCATCAATCTATTTTTGTAAACCTCTTC GTACTATTAAATTTTGCCCTAAAAGACCTCTTCTAATGATTGTTGCCAGTGACTGATGAT TACTTTGATTCTCTTTTTACTTAAAATAAGAAAAGGAGCACTTTAATCACCAACCGAAAA GTCAGATTGTTTCCTTGTCTTGTCTTACACTAATTTGAACTCTTTTAACGATTGCTGCTC TTGTTGTTTTTGACATTGTTAATAGTAACACAACAGTAAAACCGTCACCATTTACTACCA ATTACTTTTAGTTTCTGTTGTATAAGAAAAAATACACAGTAAGGTTTTATCTTTAAGTTA CATTTAAAAAAACAGACAAACAAAAAACGAAAGTGGCTGGCACTCGATGAACCTGAGGTT ATCCTCTGCATCAAGTTCCCAAGGTAAAGGGCTTTCTTATGCTTTCAGGTAAAGCCTATA GACATAGAAGTTACTGTCCCCATTCCTAAGACTTTTCCTTTTGCTTCCCGTCAAGTTGAT TGTCCGTTTAATTTTGCTGTTATGTGTTCTTCCTACTCCCGTGCCCGTCTGATCCGCAGA TCAGAACCTTGTTTCTGTCGGGCGGCACCCAGGGGAGCCTGCGCACATCCAGACGGACCT GTGTTACCACAGACGTAACGTTAGCGACCCCTCAGACCGCGGCTGACCATTCCCCACGCG TGACCCGGCCTCTCTATCAGGACTGAAAGTGTAGGTTTAGCAGAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 324-443, + strand, RNAz p=0.525104 | |
| 1144-1261, - strand, RNAz p=0.757437 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 324-443, + strand, RNAz p=0.525104 | |
| 1144-1261, - strand, RNAz p=0.757437 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 125-518, gnl|bosTau2|chr28 (1786548-1786941) | |
| 125-518, gnl|Hg17|chr1 (227863871-227863478) | |
| 203-516, gnl|bosTau2|chr18 (45486326-45486639) | |
| 203-516, gnl|Hg17|chr19 (45998846-45999159) | |
| 203-516, gnl|Mm7|chr7 (24083793-24083480) | |
| 633-777, gnl|bosTau2|chr28 (1841215-1841359) | |
| 633-777, gnl|canFam2|chr4 (11104269-11104102) | |
| 633-777, gnl|danRer3|chr13 (47127064-47127226) | |
| 633-777, gnl|dasNov1|scaffold_52364 (7982-7816) | |
| 633-777, gnl|echTel1|scaffold_297428 (720-881) | |
| 633-777, gnl|fr1|chrUn (270156924-270157075) | |
| 633-777, gnl|galGal2|chr3 (35898177-35898023) | |
| 633-777, gnl|hg17|chr1 (227813025-227813191) | |
| 633-777, gnl|Hg17|chr1 (227813184-227813040) | |
| 633-777, gnl|loxAfr1|scaffold_51013 (11418-11251) | |
| 633-777, gnl|mm7|chr8 (123501398-123501563) | |
| 633-777, gnl|Mm7|chr8 (123501556-123501412) | |
| 633-777, gnl|monDom2|scaffold_13 (56104649-56104484) | |
| 633-777, gnl|oryCun1|scaffold_208712 (49158-49323) | |
| 633-777, gnl|panTro1|chr1_random (49467243-49467077) | |
| 633-777, gnl|rheMac2|chr1 (225584500-225584334) | |
| 633-777, gnl|rn3|chr19 (55089719-55089884) | |
| 633-777, gnl|tetNig1|chr17 (1901526-1901375) | |
| 633-777, gnl|xenTro1|scaffold_986 (212266-212429) | |
| 840-2093, gnl|bosTau2|chr28 (1845002-1846250) | |
| 840-2093, gnl|Hg17|chr1 (227808959-227807502) | |
| 840-2093, gnl|Mm7|chr8 (123498164-123497028) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-518, gnl|bosTau2|chr28 (1786548-1786941) | |
| 125-518, gnl|Hg17|chr1 (227863871-227863478) | |
| 203-516, gnl|bosTau2|chr18 (45486326-45486639) | |
| 203-516, gnl|Hg17|chr19 (45998846-45999159) | |
| 203-516, gnl|Mm7|chr7 (24083793-24083480) | |
| 633-777, gnl|bosTau2|chr28 (1841215-1841359) | |
| 633-777, gnl|canFam2|chr4 (11104269-11104102) | |
| 633-777, gnl|danRer3|chr13 (47127064-47127226) | |
| 633-777, gnl|dasNov1|scaffold_52364 (7982-7816) | |
| 633-777, gnl|echTel1|scaffold_297428 (720-881) | |
| 633-777, gnl|fr1|chrUn (270156924-270157075) | |
| 633-777, gnl|galGal2|chr3 (35898177-35898023) | |
| 633-777, gnl|hg17|chr1 (227813025-227813191) | |
| 633-777, gnl|Hg17|chr1 (227813184-227813040) | |
| 633-777, gnl|loxAfr1|scaffold_51013 (11418-11251) | |
| 633-777, gnl|mm7|chr8 (123501398-123501563) | |
| 633-777, gnl|Mm7|chr8 (123501556-123501412) | |
| 633-777, gnl|monDom2|scaffold_13 (56104649-56104484) | |
| 633-777, gnl|oryCun1|scaffold_208712 (49158-49323) | |
| 633-777, gnl|panTro1|chr1_random (49467243-49467077) | |
| 633-777, gnl|rheMac2|chr1 (225584500-225584334) | |
| 633-777, gnl|rn3|chr19 (55089719-55089884) | |
| 633-777, gnl|tetNig1|chr17 (1901526-1901375) | |
| 633-777, gnl|xenTro1|scaffold_986 (212266-212429) | |
| 840-2093, gnl|bosTau2|chr28 (1845002-1846250) | |
| 840-2093, gnl|Hg17|chr1 (227808959-227807502) | |
| 840-2093, gnl|Mm7|chr8 (123498164-123497028) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| vin (0.665115) | |
| ova (0.516529) | |
| ret (0.514933) | |
| isp (0.451128) | |
| mas (0.42061) | |
| ldo (0.38801) | |
| thg (0.380373) | |
| tbr (0.308356) | |
| bfe (0.299715) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| ova (0.516529) | |
| ret (0.514933) | |
| isp (0.451128) | |
| mas (0.42061) | |
| ldo (0.38801) | |
| thg (0.380373) | |
| tbr (0.308356) | |
| bfe (0.299715) | |
| ste (0.270416) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |