Non-Coding RNA Search

Ss1.1-rspl02_h16.5

Sequence:


               
               TTTCCTTATTTATTTTTAAACCAAGAGAGACACTAGTTTCTTGAAACCCAGGTGCTCCAG
CAAAGGGCCCCGGGAATTACACAGGCCACTTTGGTGAAGTTAGGGAGCACTGATTTTGCC
CAGTACGTCAAGAGCCATCCTCAAATTTGGCCATTCTGTCCCAGGCCATACAGTGTTGCA
CAAACATGACGTAAAGGCACATACACACGCAGGGTCCTCACTCCGCAAGTCCCTGGGACC
CCGAGCTGAGGGGGTTGGATGCAGCAGGTTGCAGGCATTGCCTCTTGCTGCCTCCCCAGG
GAGCTGGCTCAGGTAGCTGCACCATTCCACCGGGAGTTAGCGAGTGGCTCAGGGGATGTG
TCTTCTGTTCTCAGAAAGGTCTGGGCTTGAAAGGACACTGCACCTCCTGGGGTTTCTTGT
CCAGATGCTCTGTACCAATGTTCCATCTTTAAAACAGACATGGCCCCGCCCTAGAGGTTT
GCACGAGGCACAAAAGAGGACTGCGTTCGCCTGCCTTGACTTTCCCACTTTCAGCATGTC
TCCGTGTCTGAAGGAGCGGCGATTGTTTCACTGCTTGTAACTTGGCTGGGTTCTAAGAAC
GTTTTACATGCTGAGCAAAAAAGAAAGAAAACGCAAGTCACAGACCAGGACATCCAGTGA
CGTTCCGGTGCTCTGTAGCGTGTCTCTGTGAAGTGACCGAGGGGAAATGTTCATTCTTCA
ACTTTGCTAATTATGCTTTGAGGCAGTAAAATGCAAAAGACCATAGAATTTGTATTTCTT
TTTAAAAATACAATTTATAACATTATATTTTGTACTCTTTATATTAGAATTTGTAACTAG
ATTGATGTATTTAACTCTATTTCTGAAAAAATAATTCAATGTTTCAGTTGTGTGATAAAA
ATATTTAGATAAAACATATTCATTCTATTGGAATTTGAAATCAATAAAAACATCTTGGAG
TTCTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTTATTTATTTTTAAACCAAGAGAGACACTAGTTTCTTGAAACCCAGGTGCTCCAG
CAAAGGGCCCCGGGAATTACACAGGCCACTTTGGTGAAGTTAGGGAGCACTGATTTTGCC
CAGTACGTCAAGAGCCATCCTCAAATTTGGCCATTCTGTCCCAGGCCATACAGTGTTGCA
CAAACATGACGTAAAGGCACATACACACGCAGGGTCCTCACTCCGCAAGTCCCTGGGACC
CCGAGCTGAGGGGGTTGGATGCAGCAGGTTGCAGGCATTGCCTCTTGCTGCCTCCCCAGG
GAGCTGGCTCAGGTAGCTGCACCATTCCACCGGGAGTTAGCGAGTGGCTCAGGGGATGTG
TCTTCTGTTCTCAGAAAGGTCTGGGCTTGAAAGGACACTGCACCTCCTGGGGTTTCTTGT
CCAGATGCTCTGTACCAATGTTCCATCTTTAAAACAGACATGGCCCCGCCCTAGAGGTTT
GCACGAGGCACAAAAGAGGACTGCGTTCGCCTGCCTTGACTTTCCCACTTTCAGCATGTC
TCCGTGTCTGAAGGAGCGGCGATTGTTTCACTGCTTGTAACTTGGCTGGGTTCTAAGAAC
GTTTTACATGCTGAGCAAAAAAGAAAGAAAACGCAAGTCACAGACCAGGACATCCAGTGA
CGTTCCGGTGCTCTGTAGCGTGTCTCTGTGAAGTGACCGAGGGGAAATGTTCATTCTTCA
ACTTTGCTAATTATGCTTTGAGGCAGTAAAATGCAAAAGACCATAGAATTTGTATTTCTT
TTTAAAAATACAATTTATAACATTATATTTTGTACTCTTTATATTAGAATTTGTAACTAG
ATTGATGTATTTAACTCTATTTCTGAAAAAATAATTCAATGTTTCAGTTGTGTGATAAAA
ATATTTAGATAAAACATATTCATTCTATTGGAATTTGAAATCAATAAAAACATCTTGGAG
TTCTAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               463-964, gnl|bosTau2|chr24 (2482419-2481910)
               

               
               463-964, gnl|Hg17|chr18 (72199693-72199135)
               

               
               463-964, gnl|Mm7|chr18 (83354140-83354632)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               463-964, gnl|bosTau2|chr24 (2482419-2481910)
               

               
               463-964, gnl|Hg17|chr18 (72199693-72199135)
               

               
               463-964, gnl|Mm7|chr18 (83354140-83354632)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cut (0.679694)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               hlv (0.278513)
               

               
               sto (0.179824)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.679694)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               hlv (0.278513)
               

               
               sto (0.179824)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	463-964, gnl\|bosTau2\|chr24 (2482419-2481910)
	463-964, gnl\|Hg17\|chr18 (72199693-72199135)
	463-964, gnl\|Mm7\|chr18 (83354140-83354632)

	cut (0.679694)
	cmu (0.372787)
	cje (0.330469)
	hlv (0.278513)
	sto (0.179824)
	cag (0.151194)
	spl (0.143184)
	csk (0.140746)
	lyg (0.133103)
	ret (0.128733)
	pgl (0.118483)
	spc (0.113366)