Ss1.1-rspl02_h18.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TTTTGCTGATGTCAAGCATCCCTGCTACAAGATGGCCTACTTCCATGAGCTGTCCAGCCG CGTGAGCTTCCAGGAAGCACGCCAGGCTTGTGAGAGCGAGGATGGTGCCCTTCTCAGCCT TGAGAATGAAGCAGAACAGAAGTTGATAGAAAGCATGCTGCAAAACCTGTCAAAGCCAGG AACAGGGATTTCCGATGGGGATTTCTGGATCGGGCTCTGGAGAAATGGAGAGGGGCACAC GTCTGGTGCCTGCCCAGATCTCTACCAGTGGTCTGATGGAAGCAGTTCCCAGTACCGAAA CTGGTATACTGATGAGCCTTCCTGCGGAAGTGAAAAGTGTGTTGTGATGTATCATCAGCC AACAGCCAACCCCGGCCTTGGAGGTCCCTACCTTTACCAGTGGAATGATGACAGATGCAA TATGAAGCACAATTACATCTGCAAGTATGAACCAGAGATTTATCCAACAGCTCCCGTAGA AAAGACTTATTTTACAAATCAACCCGGAGACACTCATCAAAATGTGGTTGTTACTGAAGC AGGAATAATTCCCAATCTAATCTATGTCATTATACCAACGATCCCCCTGCTCTTATTGAT ACTGGTTGCCTTTGGAACCTGCTGTTTCCAGATGTTGCATAAAAGTAAAGGAAGAACAAA AACTAGCCCAAATCATTCCACACTGTGGATTTCAAAAAGCACCAGAAAAGAAAGTGGCAT GGAAGTATAAAACTTCATTGACTT |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TTTTGCTGATGTCAAGCATCCCTGCTACAAGATGGCCTACTTCCATGAGCTGTCCAGCCG CGTGAGCTTCCAGGAAGCACGCCAGGCTTGTGAGAGCGAGGATGGTGCCCTTCTCAGCCT TGAGAATGAAGCAGAACAGAAGTTGATAGAAAGCATGCTGCAAAACCTGTCAAAGCCAGG AACAGGGATTTCCGATGGGGATTTCTGGATCGGGCTCTGGAGAAATGGAGAGGGGCACAC GTCTGGTGCCTGCCCAGATCTCTACCAGTGGTCTGATGGAAGCAGTTCCCAGTACCGAAA CTGGTATACTGATGAGCCTTCCTGCGGAAGTGAAAAGTGTGTTGTGATGTATCATCAGCC AACAGCCAACCCCGGCCTTGGAGGTCCCTACCTTTACCAGTGGAATGATGACAGATGCAA TATGAAGCACAATTACATCTGCAAGTATGAACCAGAGATTTATCCAACAGCTCCCGTAGA AAAGACTTATTTTACAAATCAACCCGGAGACACTCATCAAAATGTGGTTGTTACTGAAGC AGGAATAATTCCCAATCTAATCTATGTCATTATACCAACGATCCCCCTGCTCTTATTGAT ACTGGTTGCCTTTGGAACCTGCTGTTTCCAGATGTTGCATAAAAGTAAAGGAAGAACAAA AACTAGCCCAAATCATTCCACACTGTGGATTTCAAAAAGCACCAGAAAAGAAAGTGGCAT GGAAGTATAAAACTTCATTGACTT |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 49 entry(ies) | More info |
Aligned organism(s): 49 entry(ies) | Help | Less info |
1-316, gnl|bosTau2|chr1 (9618683-9618366) | |
1-316, gnl|canFam2|chr31 (17603701-17604030) | |
1-316, gnl|danRer3|chr24 (22340986-22341341) | |
1-316, gnl|dasNov1|scaffold_9692 (61602-61925) | |
1-316, gnl|echTel1|scaffold_316596 (40790-41116) | |
1-316, gnl|fr1|chrUn (117282935-117283343) | |
1-316, gnl|galGal2|chr1 (93429581-93429911) | |
1-316, gnl|hg17|chr21 (18550684-18551013) | |
1-316, gnl|Hg17|chr21 (18550710-18551027) | |
1-316, gnl|loxAfr1|scaffold_36714 (8599-8276) | |
1-316, gnl|mm7|chr16 (78938351-78938680) | |
1-316, gnl|Mm7|chr16 (78938377-78938678) | |
1-316, gnl|monDom2|scaffold_29 (5253867-5254192) | |
1-316, gnl|oryCun1|scaffold_212877 (119426-119097) | |
1-316, gnl|panTro1|chr22 (18667775-18668104) | |
1-316, gnl|rheMac2|chr3 (28664464-28664136) | |
1-316, gnl|rn3|chr11 (18004511-18004840) | |
1-316, gnl|tetNig1|chrUn_random (131034684-131035108) | |
1-316, gnl|xenTro1|scaffold_72 (266161-266491) | |
453-554, gnl|bosTau2|chr1 (9612408-9612305) | |
453-554, gnl|canFam2|chr31 (17607999-17608085) | |
453-554, gnl|danRer3|chr5 (64413115-64413009) | |
453-554, gnl|echTel1|scaffold_316596 (47760-47847) | |
453-554, gnl|hg17|chr21 (18554372-18554458) | |
453-554, gnl|Hg17|chr21 (18554385-18554488) | |
453-554, gnl|loxAfr1|scaffold_36714 (4054-3967) | |
453-554, gnl|mm7|chr16 (78941695-78941780) | |
453-554, gnl|Mm7|chr16 (78941707-78941810) | |
453-554, gnl|monDom2|scaffold_29 (5257440-5257526) | |
453-554, gnl|oryCun1|scaffold_212877 (110021-109935) | |
453-554, gnl|panTro1|chr22 (18671485-18671571) | |
453-554, gnl|rheMac2|chr3 (28660444-28660358) | |
453-554, gnl|rn3|chr11 (18008911-18008997) | |
453-554, gnl|xenTro1|scaffold_72 (274264-274348) | |
644-744, gnl|bosTau2|chr1 (9607015-9606915) | |
644-744, gnl|canFam2|chr31 (17613210-17613350) | |
644-744, gnl|danRer3|chr24 (22351093-22351227) | |
644-744, gnl|dasNov1|scaffold_9692 (71181-71320) | |
644-744, gnl|galGal2|chr1 (93440376-93440517) | |
644-744, gnl|hg17|chr21 (18560069-18560206) | |
644-744, gnl|Hg17|chr21 (18560140-18560240) | |
644-744, gnl|loxAfr1|scaffold_21536 (24752-24613) | |
644-744, gnl|mm7|chr16 (78947420-78947560) | |
644-744, gnl|Mm7|chr16 (78947494-78947594) | |
644-744, gnl|monDom2|scaffold_29 (5261654-5261799) | |
644-744, gnl|panTro1|chr22 (18677063-18677200) | |
644-744, gnl|rheMac2|chr3 (28654950-28654811) | |
644-744, gnl|rn3|chr11 (18014470-18014611) | |
644-744, gnl|xenTro1|scaffold_72 (278466-278618) |
Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-316, gnl|bosTau2|chr1 (9618683-9618366) | |
1-316, gnl|canFam2|chr31 (17603701-17604030) | |
1-316, gnl|danRer3|chr24 (22340986-22341341) | |
1-316, gnl|dasNov1|scaffold_9692 (61602-61925) | |
1-316, gnl|echTel1|scaffold_316596 (40790-41116) | |
1-316, gnl|fr1|chrUn (117282935-117283343) | |
1-316, gnl|galGal2|chr1 (93429581-93429911) | |
1-316, gnl|hg17|chr21 (18550684-18551013) | |
1-316, gnl|Hg17|chr21 (18550710-18551027) | |
1-316, gnl|loxAfr1|scaffold_36714 (8599-8276) | |
1-316, gnl|mm7|chr16 (78938351-78938680) | |
1-316, gnl|Mm7|chr16 (78938377-78938678) | |
1-316, gnl|monDom2|scaffold_29 (5253867-5254192) | |
1-316, gnl|oryCun1|scaffold_212877 (119426-119097) | |
1-316, gnl|panTro1|chr22 (18667775-18668104) | |
1-316, gnl|rheMac2|chr3 (28664464-28664136) | |
1-316, gnl|rn3|chr11 (18004511-18004840) | |
1-316, gnl|tetNig1|chrUn_random (131034684-131035108) | |
1-316, gnl|xenTro1|scaffold_72 (266161-266491) | |
453-554, gnl|bosTau2|chr1 (9612408-9612305) | |
453-554, gnl|canFam2|chr31 (17607999-17608085) | |
453-554, gnl|danRer3|chr5 (64413115-64413009) | |
453-554, gnl|echTel1|scaffold_316596 (47760-47847) | |
453-554, gnl|hg17|chr21 (18554372-18554458) | |
453-554, gnl|Hg17|chr21 (18554385-18554488) | |
453-554, gnl|loxAfr1|scaffold_36714 (4054-3967) | |
453-554, gnl|mm7|chr16 (78941695-78941780) | |
453-554, gnl|Mm7|chr16 (78941707-78941810) | |
453-554, gnl|monDom2|scaffold_29 (5257440-5257526) | |
453-554, gnl|oryCun1|scaffold_212877 (110021-109935) | |
453-554, gnl|panTro1|chr22 (18671485-18671571) | |
453-554, gnl|rheMac2|chr3 (28660444-28660358) | |
453-554, gnl|rn3|chr11 (18008911-18008997) | |
453-554, gnl|xenTro1|scaffold_72 (274264-274348) | |
644-744, gnl|bosTau2|chr1 (9607015-9606915) | |
644-744, gnl|canFam2|chr31 (17613210-17613350) | |
644-744, gnl|danRer3|chr24 (22351093-22351227) | |
644-744, gnl|dasNov1|scaffold_9692 (71181-71320) | |
644-744, gnl|galGal2|chr1 (93440376-93440517) | |
644-744, gnl|hg17|chr21 (18560069-18560206) | |
644-744, gnl|Hg17|chr21 (18560140-18560240) | |
644-744, gnl|loxAfr1|scaffold_21536 (24752-24613) | |
644-744, gnl|mm7|chr16 (78947420-78947560) | |
644-744, gnl|Mm7|chr16 (78947494-78947594) | |
644-744, gnl|monDom2|scaffold_29 (5261654-5261799) | |
644-744, gnl|panTro1|chr22 (18677063-18677200) | |
644-744, gnl|rheMac2|chr3 (28654950-28654811) | |
644-744, gnl|rn3|chr11 (18014470-18014611) | |
644-744, gnl|xenTro1|scaffold_72 (278466-278618) |
Expressed library(ies): 4 entry(ies) | More info |
Expressed library(ies): 4 entry(ies) | Help | Less info |
fat (0.294855) | |
spl (0.143184) | |
eru (0.120048) | |
ecc (0.115035) |
Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fat (0.294855) | |
spl (0.143184) | |
eru (0.120048) | |
ecc (0.115035) |