Non-Coding RNA Search

Ss1.1-rspl02_i11.5

Sequence:


               
               AATGGGAGCATTTTTAGACAAACCAAAGATGGAAAAACATAACGCCCAAGGCCAGGTAAT
GGGTTGCGATATGGGCTAAGCAGCATGCAAGGCTGGCGAGTTGAAATGGAGGATGCACAT
ACAGCTGTGATTGGTTTGCCAAGTGGACTTGAAACATGGTCATTCTTTGCTGTATATGAT
GGGCATGCTGGTTCTCAGGTTGCCAAATACTGCTGTGAGCATTTGTTAGATCACATCACC
AATAACCAGGATTTTAAAGGGTCTGCAGGAGCACCTTCTGTGGAAAATGTGAAGAATGGA
ATCAGAACAGGTTTTCTGGAAATTGATGAACACATGAGAGTCATGTCAGAGAAGAAACAT
GGTGCTGATAGAAGTGGGTCAACAGCTGTAGGTGTCTTAATATCTCCTCAGCATACTTAT
TTCATTAACTGTGGAGACTCGAGAGGTTTACTTTGTAGGAACAGGAAAGTTCACTTCTTC
ACACAAGATCACAAACCAAGTAATCCGCTGGAAAAAGAACGAATTCAGAATGCAGGTGGT
TCTGTGATGATTCAGCGTGTGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGGAGCATTTTTAGACAAACCAAAGATGGAAAAACATAACGCCCAAGGCCAGGTAAT
GGGTTGCGATATGGGCTAAGCAGCATGCAAGGCTGGCGAGTTGAAATGGAGGATGCACAT
ACAGCTGTGATTGGTTTGCCAAGTGGACTTGAAACATGGTCATTCTTTGCTGTATATGAT
GGGCATGCTGGTTCTCAGGTTGCCAAATACTGCTGTGAGCATTTGTTAGATCACATCACC
AATAACCAGGATTTTAAAGGGTCTGCAGGAGCACCTTCTGTGGAAAATGTGAAGAATGGA
ATCAGAACAGGTTTTCTGGAAATTGATGAACACATGAGAGTCATGTCAGAGAAGAAACAT
GGTGCTGATAGAAGTGGGTCAACAGCTGTAGGTGTCTTAATATCTCCTCAGCATACTTAT
TTCATTAACTGTGGAGACTCGAGAGGTTTACTTTGTAGGAACAGGAAAGTTCACTTCTTC
ACACAAGATCACAAACCAAGTAATCCGCTGGAAAAAGAACGAATTCAGAATGCAGGTGGT
TCTGTGATGATTCAGCGTGTGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12005900|gb|AAG44662.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12005900|gb|AAG44662.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-564, gnl|bosTau2|chr11 (13387262-13387840)
               

               
               2-564, gnl|Hg17|chr2 (44339990-44340568)
               

               
               2-564, gnl|Mm7|chr17 (83288542-83289120)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-564, gnl|bosTau2|chr11 (13387262-13387840)
               

               
               2-564, gnl|Hg17|chr2 (44339990-44340568)
               

               
               2-564, gnl|Mm7|chr17 (83288542-83289120)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               lnt (0.142308)

	2-564, gnl\|bosTau2\|chr11 (13387262-13387840)
	2-564, gnl\|Hg17\|chr2 (44339990-44340568)
	2-564, gnl\|Mm7\|chr17 (83288542-83289120)