Non-Coding RNA Search

Ss1.1-rspl02_l16.5

Sequence:


               
               ATGCCAGAGCTAAGGATATTGTGAAGCACTTGTTCGTAAGCGTAACCTTGGAATGTCTGG
CTGAAAGGAGTTGTTGCAGTCAGTGCATAGTCCTAGATATTAGAGAACAATCTGTAAATG
ACACTTAATTTCATTTGCACAGCTGAGGTAGACTTAAAAAATACTCTTATTTTCCTTCTT
CTAGCTCAAGTGGTATATTTCATTTGCCATAGAATTAAAAATAGTACTGTTTATAAATAG
TACTATTTAACTCTTCACAACCTTGATAAATTTGCTCTCAGCTATCATTTACAGATTGGA
CTAATTGCTTAAAATCCATACAGAGACTGAAGAACTCTGCATTATAGCAATACCTAACTG
ATACTGTGTATGCAAACAGTCCCGCATTGCTTTTTATAATAGTGTTTATCCTGGAATGAT
GAACGAGAATCTTCTAATGGTCATGCTCGCTACTTTGGCCACTTCAACTTAGAATGTTCT
TTGCTAGTGTTTTCTTTGTAGTGTTAACATTTTGAAATTCATGTTTCAGAGACATCACAG
AATGTTTCCTCATCACAGAATTTACTCTTATTCCATGAAAAAAAAAAAGTTAACACCTTC
AGAAGAGTGTGTCAGTTGTAGACTATGAGACTTGGAAATCCTCTTGAGGTAAAAGGCTGC
AAATACCCAGTATTATAAAATCCATAGTCACGTGTGCCTGAACTTATTAAAGGAATACCA
GATCTATGCAGTATACACTTTCTAGGCAGAATTCAAGAGGAATCATTCCTAATGCAAATG
AAGACAGCCAGGACAGAAGAGCATGAGCACGAATTCTTGTTCTTTCTCACTAATTTAATT
TGCAGAAACTCATTCAGTAAAGCAGTTCATACAGGTCATACTATTGGAAATTTGGTTTAT
TTTCCTCAAAATCATTTACTTTAAGCAGCTCATTTCTGTAGAAAAACGTTGGCTCTGTGA
AATAATCACTGCCAGGATTCTTTCATTTCTGTACTATTTTATATAATTGAATTTAACTTC
TCTCACCAGCAAGTATTTTACAGGTGCCTTGAATTAAAACAAAATTGATTTTACAATTTT
AGTGTAAGGCTTTGTGCTTAGGCCACTTTAAAAAAGATGAACTTATGTAATGGTTAGTTA
TTCAGTGTACCTATTTGTTTTCTAATTGTTTGACTGTTTTATTCAGCTTGAAACTTTACT
AGGAGGCCACGTAGTAATATTAGAAATATTACTATAGAAATTATAAAATATAGAAATTGG
CCACAATATTCTGTTACATATTAGAGGGATATCGGTGTTTCTCTAAGTGTGATCTGTCGA
CCATCTGAGTCCTAGGAGTGCTTGTTAAGAATCTGTATTTCGGAGTTCCCATCGTGGCTC
AGCAGAAATGAACCTTACTGGCAGCCATGAGGACACAAGTTCGATCCCTGGCCTTGCTCA
GTGGGTTATGGTTCCAACATTGCTGTGAGCTATGGTGTAGGTCACTGACGCGGCTCCAAT
CCTGTGTTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCAGAGCTAAGGATATTGTGAAGCACTTGTTCGTAAGCGTAACCTTGGAATGTCTGG
CTGAAAGGAGTTGTTGCAGTCAGTGCATAGTCCTAGATATTAGAGAACAATCTGTAAATG
ACACTTAATTTCATTTGCACAGCTGAGGTAGACTTAAAAAATACTCTTATTTTCCTTCTT
CTAGCTCAAGTGGTATATTTCATTTGCCATAGAATTAAAAATAGTACTGTTTATAAATAG
TACTATTTAACTCTTCACAACCTTGATAAATTTGCTCTCAGCTATCATTTACAGATTGGA
CTAATTGCTTAAAATCCATACAGAGACTGAAGAACTCTGCATTATAGCAATACCTAACTG
ATACTGTGTATGCAAACAGTCCCGCATTGCTTTTTATAATAGTGTTTATCCTGGAATGAT
GAACGAGAATCTTCTAATGGTCATGCTCGCTACTTTGGCCACTTCAACTTAGAATGTTCT
TTGCTAGTGTTTTCTTTGTAGTGTTAACATTTTGAAATTCATGTTTCAGAGACATCACAG
AATGTTTCCTCATCACAGAATTTACTCTTATTCCATGAAAAAAAAAAAGTTAACACCTTC
AGAAGAGTGTGTCAGTTGTAGACTATGAGACTTGGAAATCCTCTTGAGGTAAAAGGCTGC
AAATACCCAGTATTATAAAATCCATAGTCACGTGTGCCTGAACTTATTAAAGGAATACCA
GATCTATGCAGTATACACTTTCTAGGCAGAATTCAAGAGGAATCATTCCTAATGCAAATG
AAGACAGCCAGGACAGAAGAGCATGAGCACGAATTCTTGTTCTTTCTCACTAATTTAATT
TGCAGAAACTCATTCAGTAAAGCAGTTCATACAGGTCATACTATTGGAAATTTGGTTTAT
TTTCCTCAAAATCATTTACTTTAAGCAGCTCATTTCTGTAGAAAAACGTTGGCTCTGTGA
AATAATCACTGCCAGGATTCTTTCATTTCTGTACTATTTTATATAATTGAATTTAACTTC
TCTCACCAGCAAGTATTTTACAGGTGCCTTGAATTAAAACAAAATTGATTTTACAATTTT
AGTGTAAGGCTTTGTGCTTAGGCCACTTTAAAAAAGATGAACTTATGTAATGGTTAGTTA
TTCAGTGTACCTATTTGTTTTCTAATTGTTTGACTGTTTTATTCAGCTTGAAACTTTACT
AGGAGGCCACGTAGTAATATTAGAAATATTACTATAGAAATTATAAAATATAGAAATTGG
CCACAATATTCTGTTACATATTAGAGGGATATCGGTGTTTCTCTAAGTGTGATCTGTCGA
CCATCTGAGTCCTAGGAGTGCTTGTTAAGAATCTGTATTTCGGAGTTCCCATCGTGGCTC
AGCAGAAATGAACCTTACTGGCAGCCATGAGGACACAAGTTCGATCCCTGGCCTTGCTCA
GTGGGTTATGGTTCCAACATTGCTGTGAGCTATGGTGTAGGTCACTGACGCGGCTCCAAT
CCTGTGTTGCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               282-394, - strand, RNAz p=0.945339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-394, - strand, RNAz p=0.945339

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1211, gnl|bosTau2|chr24 (44175017-44176245)
               

               
               1-1211, gnl|Hg17|chr18 (55148261-55146985)
               

               
               1-1211, gnl|Mm7|chr18 (66377768-66376587)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1211, gnl|bosTau2|chr24 (44175017-44176245)
               

               
               1-1211, gnl|Hg17|chr18 (55148261-55146985)
               

               
               1-1211, gnl|Mm7|chr18 (66377768-66376587)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               lun (0.601956)
               

               
               mgm (0.360685)
               

               
               cst (0.280073)
               

               
               ret (0.257467)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.601956)
               

               
               mgm (0.360685)
               

               
               cst (0.280073)
               

               
               ret (0.257467)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-1211, gnl\|bosTau2\|chr24 (44175017-44176245)
	1-1211, gnl\|Hg17\|chr18 (55148261-55146985)
	1-1211, gnl\|Mm7\|chr18 (66377768-66376587)

	lun (0.601956)
	mgm (0.360685)
	cst (0.280073)
	ret (0.257467)
	nms (0.213858)
	cty (0.20816)
	cmu (0.186393)
	mcp (0.170648)
	nje (0.16592)
	tbr (0.154178)
	ski (0.146735)
	spl (0.143184)
	csk (0.140746)
	ste (0.135208)
	clu (0.119646)
	pgl (0.118483)
	jej (0.0989218)
	ldo (0.0970026)