Non-Coding RNA Search

Ss1.1-rspl02_n16.5

Sequence:


               
               GACTCTGGCACTATGGTCATGGCGGAGGGGACGGCTGTGCTGAGGCGGAACAGGCCAGGC
ACCAAGGCTCAGGATTTCTATAATTGGCCTGATGAATCCTTTGATGAAATGGACAGTACA
CTAGCTGTTCAGCAGTATATCCAACAGAACATAAGAGCAGATTGTTCCAATATTGACAAA
ATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTATGGAAGTACGAACATTTAAGGCAA
TTCTGTCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACA
TGTACTCAGATGACAGCAACTGAACAATGGATTTTTCTTTGTGCAGCTCACAAAACTCCA
AAAGAGTGTCCTGCCATAGACTATACTAGACACACACTTGATGGTGCTGCATGTCTTCTG
AATAGCAATAAATATTTTCCCAGCAGGGTTAGCATAAAGGAATCATCCGTAGCAAAACTA
GGATCTGTATGCCGTAGGATCTACAGAATATTTTCACATGCTTATTTTCATCACCGGCAG
ATTTTTGATGAATATGAAAATGAAACATTTTTGTGTCATCGATTTACTAAATTTGTGATG
AAATATAATTTGATGTCCAAGGATAACCTGATTGTACCAATTTTAGAAGAGGAAGTTCAG
AATTCAGTTTCTGGGGAAAGTGAAGCATGAAAGGAATCATATAGAAAAAATGTACTGATC
ACATAATTAACATTAATTATGTACTGTATATATGTCATTTTAGACACATCAATCATGTAT
CCATACTATAGCTTCTTTGTTTAGTATAGGTTTTTGTATGCTGAGTGTTGCCTTTTAAAA
TGAGAAATACTTTTTAAGTTATTCATGAGCTGTATATTCACTGGTGTGGCACTCATGGTT
TTTAAATAAGATTAGTATTATCTGTTTATAATGCCTGTTAATAAAAGAATTTACAGTTTG
GTAAAATTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCTGGCACTATGGTCATGGCGGAGGGGACGGCTGTGCTGAGGCGGAACAGGCCAGGC
ACCAAGGCTCAGGATTTCTATAATTGGCCTGATGAATCCTTTGATGAAATGGACAGTACA
CTAGCTGTTCAGCAGTATATCCAACAGAACATAAGAGCAGATTGTTCCAATATTGACAAA
ATTCTTGAACCACCTGAAGGCCAAGATGAAGGTGTATGGAAGTACGAACATTTAAGGCAA
TTCTGTCTTGAGCTAAATGGACTTGCTGTCAAACTTCAGAGTGAATGCCATCCAGATACA
TGTACTCAGATGACAGCAACTGAACAATGGATTTTTCTTTGTGCAGCTCACAAAACTCCA
AAAGAGTGTCCTGCCATAGACTATACTAGACACACACTTGATGGTGCTGCATGTCTTCTG
AATAGCAATAAATATTTTCCCAGCAGGGTTAGCATAAAGGAATCATCCGTAGCAAAACTA
GGATCTGTATGCCGTAGGATCTACAGAATATTTTCACATGCTTATTTTCATCACCGGCAG
ATTTTTGATGAATATGAAAATGAAACATTTTTGTGTCATCGATTTACTAAATTTGTGATG
AAATATAATTTGATGTCCAAGGATAACCTGATTGTACCAATTTTAGAAGAGGAAGTTCAG
AATTCAGTTTCTGGGGAAAGTGAAGCATGAAAGGAATCATATAGAAAAAATGTACTGATC
ACATAATTAACATTAATTATGTACTGTATATATGTCATTTTAGACACATCAATCATGTAT
CCATACTATAGCTTCTTTGTTTAGTATAGGTTTTTGTATGCTGAGTGTTGCCTTTTAAAA
TGAGAAATACTTTTTAAGTTATTCATGAGCTGTATATTCACTGGTGTGGCACTCATGGTT
TTTAAATAAGATTAGTATTATCTGTTTATAATGCCTGTTAATAAAAGAATTTACAGTTTG
GTAAAATTGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19424180|ref|NP_598212.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19424180|ref|NP_598212.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               660-778, - strand, RNAz p=0.890859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               660-778, - strand, RNAz p=0.890859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-972, gnl|bosTau2|chr17 (24941360-24942330)
               

               
               1-972, gnl|Hg17|chr11 (86210518-86209554)
               

               
               1-972, gnl|Mm7|chr1 (55392418-55400391)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-972, gnl|bosTau2|chr17 (24941360-24942330)
               

               
               1-972, gnl|Hg17|chr11 (86210518-86209554)
               

               
               1-972, gnl|Mm7|chr1 (55392418-55400391)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               bfe (0.749288)
               

               
               sug (0.509165)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.749288)
               

               
               sug (0.509165)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               bla (0.248694)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	1-972, gnl\|bosTau2\|chr17 (24941360-24942330)
	1-972, gnl\|Hg17\|chr11 (86210518-86209554)
	1-972, gnl\|Mm7\|chr1 (55392418-55400391)

	bfe (0.749288)
	sug (0.509165)
	mga (0.32041)
	tbr (0.308356)
	ldo (0.291008)
	csk (0.281492)
	ova (0.258264)
	bla (0.248694)
	mgm (0.180343)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	nco (0.161734)
	lun (0.150489)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	ecc (0.115035)
	cbl (0.114797)