Non-Coding RNA Search

Ss1.1-rspl02_o23.5

Sequence:


               
               AGAGGACATGAGGGTGAATAGAGGTTTTGTTGGCAGAGAAAAATGTTCTTCCTGTTAATG
GAGGCAACCAACCTTCTTCCTTGGACAGGGAGAGTTTGGGGTGTACCTGGTGTCTGATGG
CAGCAGCCGCCCTTATCGATGCAAGATCAAAGCTCCTGGTTTTGCTCACTTGGTAAGAAC
CAGTCCCAACGATATGAATCCAGTAATTAAATGACCTTGGTTGAGATTTTATGACCTTTC
GTTCTTTCTCCCCCACCCTGCTAATCTTGCCTAACGTTATTGCTGTCTTAAATCTTTCTA
GGCTGGTTTGGACAAGATGTCTAAGGGACACATGTTGGCGGACGTCGTTGCCATCATAGG
TACAAGGCCTGTTGTGTAGTAGAGGCGTTCTGGGCAAAGGAGTTTGGGACTCCGACTGGG
GGCAGGAACTGAATGCTTCCTGTACAGCATTGTTAAGACTATGGGTATAGACTCAAATCC
TCAGTCTCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGACATGAGGGTGAATAGAGGTTTTGTTGGCAGAGAAAAATGTTCTTCCTGTTAATG
GAGGCAACCAACCTTCTTCCTTGGACAGGGAGAGTTTGGGGTGTACCTGGTGTCTGATGG
CAGCAGCCGCCCTTATCGATGCAAGATCAAAGCTCCTGGTTTTGCTCACTTGGTAAGAAC
CAGTCCCAACGATATGAATCCAGTAATTAAATGACCTTGGTTGAGATTTTATGACCTTTC
GTTCTTTCTCCCCCACCCTGCTAATCTTGCCTAACGTTATTGCTGTCTTAAATCTTTCTA
GGCTGGTTTGGACAAGATGTCTAAGGGACACATGTTGGCGGACGTCGTTGCCATCATAGG
TACAAGGCCTGTTGTGTAGTAGAGGCGTTCTGGGCAAAGGAGTTTGGGACTCCGACTGGG
GGCAGGAACTGAATGCTTCCTGTACAGCATTGTTAAGACTATGGGTATAGACTCAAATCC
TCAGTCTCCTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.934389

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.934389

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr3 (7587657-7587173)
               

               
               1-492, gnl|Hg17|chr1 (157996427-157996911)
               

               
               1-492, gnl|Mm7|chr1 (171206615-171205237)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr3 (7587657-7587173)
               

               
               1-492, gnl|Hg17|chr1 (157996427-157996911)
               

               
               1-492, gnl|Mm7|chr1 (171206615-171205237)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.145603)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spl (0.143184)

	1-492, gnl\|bosTau2\|chr3 (7587657-7587173)
	1-492, gnl\|Hg17\|chr1 (157996427-157996911)
	1-492, gnl\|Mm7\|chr1 (171206615-171205237)