Non-Coding RNA Search

Ss1.1-rspl03_j24.5

Sequence:


               
               TTTGTTTTTCTGTCCAAAACCGTTTTTCTCGTTCCAAGTTTTAAATACTCGGAAGGAAGT
CCGGGAGAACCAAATGAAGGAGCAGGAGGAGAGGAAAAAACTTTTGTTTTTTTTCCTCGT
TTTCCAGGAGTAGCTGGAAATTAAGATCGGGTTCCTTTTCTGCCAGCTTGGAAGGGCAAC
CCCGTGACTGATTATGATTCTGAGGATGTCTATGCAAAGTTGGATTCTTGTTACAGTGTA
TCCAATCTGAAGTATTGCACATCTGAACTGGGACTGTTAACACTGATGCCAATACAGTGT
GGGGTGCCAGAATGTGTCTGCTGATATTTGTGGAAAAAAAAAATCTATTTTTGTTTACCT
ACTGTATCAAAGGGGAGTCTGGGGGAGAACGGTAGTATTTTTTTTTATCAGCTGTGAAAA
AAAATGTTACAGATCTGCACATTTTTGTGTGTACTGTTGTGTGTGTGTGTGTTTTTAGAT
TTAGCTTTTTGTTCTTATTGGTTGGCAGTAACAGGTTTTGATGACTAGCTCTTTAAAACA
CAGTACAAAGACTTCACAAATGTGATTCAGGGCCCCCAGCACCCCTGTGTCTGCAGAGTG
CCTTCAAAACTCAGCTGTTCCAGCCGGTGCCAACCTGTGAATTTCCCACCAGATCCCCTC
AAACCACTTCCCCATTTCCTTTCAGTAATCTTCCTGAAGGAATCAGGACAATAGGGCCTG
TTGTTCGGTGAATTTCTTTATTATTTCCAGCTTTTAAGATGTAATTCACTTATTTTGCAA
TGGGTTTCTTTTTTCTTTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGCTTCATT
TTGTTCCAGTGTTCAGGTATTTAGCTCCCCTTTTGTATCATTTTTTAAAATTTTTGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTTTCTGTCCAAAACCGTTTTTCTCGTTCCAAGTTTTAAATACTCGGAAGGAAGT
CCGGGAGAACCAAATGAAGGAGCAGGAGGAGAGGAAAAAACTTTTGTTTTTTTTCCTCGT
TTTCCAGGAGTAGCTGGAAATTAAGATCGGGTTCCTTTTCTGCCAGCTTGGAAGGGCAAC
CCCGTGACTGATTATGATTCTGAGGATGTCTATGCAAAGTTGGATTCTTGTTACAGTGTA
TCCAATCTGAAGTATTGCACATCTGAACTGGGACTGTTAACACTGATGCCAATACAGTGT
GGGGTGCCAGAATGTGTCTGCTGATATTTGTGGAAAAAAAAAATCTATTTTTGTTTACCT
ACTGTATCAAAGGGGAGTCTGGGGGAGAACGGTAGTATTTTTTTTTATCAGCTGTGAAAA
AAAATGTTACAGATCTGCACATTTTTGTGTGTACTGTTGTGTGTGTGTGTGTTTTTAGAT
TTAGCTTTTTGTTCTTATTGGTTGGCAGTAACAGGTTTTGATGACTAGCTCTTTAAAACA
CAGTACAAAGACTTCACAAATGTGATTCAGGGCCCCCAGCACCCCTGTGTCTGCAGAGTG
CCTTCAAAACTCAGCTGTTCCAGCCGGTGCCAACCTGTGAATTTCCCACCAGATCCCCTC
AAACCACTTCCCCATTTCCTTTCAGTAATCTTCCTGAAGGAATCAGGACAATAGGGCCTG
TTGTTCGGTGAATTTCTTTATTATTTCCAGCTTTTAAGATGTAATTCACTTATTTTGCAA
TGGGTTTCTTTTTTCTTTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGCTTCATT
TTGTTCCAGTGTTCAGGTATTTAGCTCCCCTTTTGTATCATTTTTTAAAATTTTTGGTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               8-204, - strand, RNAz p=0.836602
               

               
               402-498, - strand, RNAz p=0.591549

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-204, - strand, RNAz p=0.836602
               

               
               402-498, - strand, RNAz p=0.591549

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-822, gnl|bosTau2|chr1 (72316269-72317103)
               

               
               1-822, gnl|Hg17|chr3 (154364131-154365006)
               

               
               1-822, gnl|Mm7|chr3 (61522559-61523372)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-822, gnl|bosTau2|chr1 (72316269-72317103)
               

               
               1-822, gnl|Hg17|chr3 (154364131-154365006)
               

               
               1-822, gnl|Mm7|chr3 (61522559-61523372)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               spl (0.143184)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ova (0.129132)

	8-204, - strand, RNAz p=0.836602
	402-498, - strand, RNAz p=0.591549

	1-822, gnl\|bosTau2\|chr1 (72316269-72317103)
	1-822, gnl\|Hg17\|chr3 (154364131-154365006)
	1-822, gnl\|Mm7\|chr3 (61522559-61523372)