Non-Coding RNA Search

Ss1.1-rspl03_k12.5

Sequence:


               
               CACAGCCATGAAAGCACCAAGTCCTAACCTCTAGGCCACCAGGGAACTCCCTCTTTAATG
TGAATCTTAATATGGCCATTTATTTTACATATTAAGTTTTCATTTTTTCCACCTTCTTTG
GAAAAAATTGCTAATCTTTTCATTCAGGTTTAAATTGATGCCAGGTAATTCCAGTATTGA
GCATCTTAAATCTCTTACTTGGAATATGGATTGAGTTTGGCGCTAACTCAGAGGACTACA
GGCAAGTATTCAGGACATAGCCAGAGGGATATTTTTATAGTTGAACAATTCAATTTGTAT
ACTATGTAGATCTCTTAAGATCACGTATATTTATATGTGAAAGTAGATTTGAAATTTTGG
TTGTAGACTAAATACCATATTTAACAGTAAAGATTTTTTTTCTTCAATCATGTATCCTTT
TAATTGTACAGAATTAGAGGTACATTTAGCCATCAAGTATCATTATTGATATGTGTCCAG
GTTAGCCATACTGGATTAATAAGATTATATTTGAATAAACTATGATCTCTCTAAGTTAAT
ATATTTATTTGTTTAGAAGTTAATATTCTAAATCATTTTTTTTCCTTTTACAGGTGGATA
TTACTATCCCTTATTCATGGAAAAAGTTTTATTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGCCATGAAAGCACCAAGTCCTAACCTCTAGGCCACCAGGGAACTCCCTCTTTAATG
TGAATCTTAATATGGCCATTTATTTTACATATTAAGTTTTCATTTTTTCCACCTTCTTTG
GAAAAAATTGCTAATCTTTTCATTCAGGTTTAAATTGATGCCAGGTAATTCCAGTATTGA
GCATCTTAAATCTCTTACTTGGAATATGGATTGAGTTTGGCGCTAACTCAGAGGACTACA
GGCAAGTATTCAGGACATAGCCAGAGGGATATTTTTATAGTTGAACAATTCAATTTGTAT
ACTATGTAGATCTCTTAAGATCACGTATATTTATATGTGAAAGTAGATTTGAAATTTTGG
TTGTAGACTAAATACCATATTTAACAGTAAAGATTTTTTTTCTTCAATCATGTATCCTTT
TAATTGTACAGAATTAGAGGTACATTTAGCCATCAAGTATCATTATTGATATGTGTCCAG
GTTAGCCATACTGGATTAATAAGATTATATTTGAATAAACTATGATCTCTCTAAGTTAAT
ATATTTATTTGTTTAGAAGTTAATATTCTAAATCATTTTTTTTCCTTTTACAGGTGGATA
TTACTATCCCTTATTCATGGAAAAAGTTTTATTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-201, + strand, RNAz p=0.740507

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-201, + strand, RNAz p=0.740507

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               89-636, gnl|bosTau2|chr12 (8337756-8337213)
               

               
               89-636, gnl|Hg17|chr13 (49517425-49516862)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-636, gnl|bosTau2|chr12 (8337756-8337213)
               

               
               89-636, gnl|Hg17|chr13 (49517425-49516862)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lin (0.145603)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

	89-636, gnl\|bosTau2\|chr12 (8337756-8337213)
	89-636, gnl\|Hg17\|chr13 (49517425-49516862)