Non-Coding RNA Search

Ss1.1-rspl03_k18.5

Sequence:


               
               ATGCTTAAAGTAGCCTGTGCTGAAGAGTGGCAGGAAAGCAGGACGGAGGGTGAACACTCT
AAGGAGGTTATTAAACCATATGATTGGACCTATACAACAGATTATAAGGGAACATTACTT
GGAGAATCACTTAAGTTAAAGGTTGTACCTACAACAGATCATATAGATACAGAGAAATTG
AAAGCCAGAGAGCAGATTAAGTTTTTTGAAGAAGTTCTTCTGTTTGAGGATGAACTTCAT
GATCATGGAGTTTCAAGCCTGAGTGTGAAAATTAGAGTCATGCCGTCAAGCTTCTTCTTA
CTGTTGCGGTTTTTCTTGAGAATTGATGGGGTACTTATTAGAATGAATGATACAAGACTT
TACCATGAGGCCGACAAGACCTACATGTTACGAGAATATACATCACGAGAGAGCAAAATT
TCTAATTTAATGCATGTTTCACCTTCCCTCTTCACGGAACCTAATGAAATATCACAGTAT
TTACCGATAAAGGAGGCGGTTTGTGAGAAGCTAATATTTCCAGAAAGAATTGATGCTAAC
CCTTCAGACTCAAAAGAATGTACACCTATGGAATAGAATGTGTTACAACATATACTCACC
GTGGAATCTGACTGGAGACCTTGGGGCTATTTGGAGGAGGGTATTTTTATTATGAGATTT
AATTGCCTTGTCTATGTGCAAATTTTCTGTAGCCTTAAAGGAAAAAAAATAAAAGATTGT
TACAGGCAGGTTCCACTCAACTGCCATTTGTACTCTCTGTCTTCAAATTCATATGCCAGG
TTTATATTTTCTGGAGTTTAATTCGGATTTCTAAATTGTTACAAAATGGGGTCTCACCAG
TAGGAGGTGATGTGTGTTTGTCTCAGGAACAGTGGACACGACTTGTATCCATCATGAAAT
GCTGTCTTCTACCATGGGGAGGTTAATTTAAATCACTGAATGATGACCTTGTAACTTTCA
TAGGATTCCTAATCATGCATGTTGATGTACTGGTTCTTTACCTTGGGCTTTTTGGTGTTT
ATTCGCACTTGTGGAGAGTCATGACTTGCCTCCTAGAAAACTGACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCTTAAAGTAGCCTGTGCTGAAGAGTGGCAGGAAAGCAGGACGGAGGGTGAACACTCT
AAGGAGGTTATTAAACCATATGATTGGACCTATACAACAGATTATAAGGGAACATTACTT
GGAGAATCACTTAAGTTAAAGGTTGTACCTACAACAGATCATATAGATACAGAGAAATTG
AAAGCCAGAGAGCAGATTAAGTTTTTTGAAGAAGTTCTTCTGTTTGAGGATGAACTTCAT
GATCATGGAGTTTCAAGCCTGAGTGTGAAAATTAGAGTCATGCCGTCAAGCTTCTTCTTA
CTGTTGCGGTTTTTCTTGAGAATTGATGGGGTACTTATTAGAATGAATGATACAAGACTT
TACCATGAGGCCGACAAGACCTACATGTTACGAGAATATACATCACGAGAGAGCAAAATT
TCTAATTTAATGCATGTTTCACCTTCCCTCTTCACGGAACCTAATGAAATATCACAGTAT
TTACCGATAAAGGAGGCGGTTTGTGAGAAGCTAATATTTCCAGAAAGAATTGATGCTAAC
CCTTCAGACTCAAAAGAATGTACACCTATGGAATAGAATGTGTTACAACATATACTCACC
GTGGAATCTGACTGGAGACCTTGGGGCTATTTGGAGGAGGGTATTTTTATTATGAGATTT
AATTGCCTTGTCTATGTGCAAATTTTCTGTAGCCTTAAAGGAAAAAAAATAAAAGATTGT
TACAGGCAGGTTCCACTCAACTGCCATTTGTACTCTCTGTCTTCAAATTCATATGCCAGG
TTTATATTTTCTGGAGTTTAATTCGGATTTCTAAATTGTTACAAAATGGGGTCTCACCAG
TAGGAGGTGATGTGTGTTTGTCTCAGGAACAGTGGACACGACTTGTATCCATCATGAAAT
GCTGTCTTCTACCATGGGGAGGTTAATTTAAATCACTGAATGATGACCTTGTAACTTTCA
TAGGATTCCTAATCATGCATGTTGATGTACTGGTTCTTTACCTTGGGCTTTTTGGTGTTT
ATTCGCACTTGTGGAGAGTCATGACTTGCCTCCTAGAAAACTGACCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|59016861|emb|CAI46265.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59016861|emb|CAI46265.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               140-273, + strand, RNAz p=0.894208

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-273, + strand, RNAz p=0.894208

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               140-273, gnl|bosTau2|chr3 (2363200-2363333)
               

               
               140-273, gnl|Hg17|chr1 (164892263-164892396)
               

               
               140-273, gnl|Mm7|chr1 (165193740-165193607)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-273, gnl|bosTau2|chr3 (2363200-2363333)
               

               
               140-273, gnl|Hg17|chr1 (164892263-164892396)
               

               
               140-273, gnl|Mm7|chr1 (165193740-165193607)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nco (0.161734)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	140-273, gnl\|bosTau2\|chr3 (2363200-2363333)
	140-273, gnl\|Hg17\|chr1 (164892263-164892396)
	140-273, gnl\|Mm7\|chr1 (165193740-165193607)