Non-Coding RNA Search

Ss1.1-rspl03_l13.5

Sequence:


               
               CAAGACCCCCTTTTTATAAAGAAACAAAAAATATTTCAAGTCTTTTAGTTTAACACATAA
TCATTAAGCACCTAAAAGAATATTTTACAAGCAATAGTATTTCAACAGTGTATTGCTAAT
ATTTTTGATACAATGATTTCATATTGGAATCATGACCTGTGCAAAGACAGATCACTTTGA
TTGCTATACTAGTGGAACTTAAGCTAAATGTTTGCACATTCACATTCTCCTCACATTTAG
AACTCCTTCACGAAATGGTCAGCATCTCAGGCCCTAATTTATATTTTGAGATGTCCTATA
TTCCCCAGATATTGGGAAAAATAGTCCCTCCTTTTGGTTCTAAAGCATTAAAGAGCTGCT
ATAGACCTAAATCCCTTGATTGGTTTTAACTTAGAAGTTTAGCTCATGTCTTTCTATTTC
GGACCTTAATTAAGTTCTGGCGTAATCTAAAGCTTTTTCCAAGATGTGTTTTGTCTCACT
GGATCATCTTAACGACTTAAAAGTCTTGATATTCTAGAATTTGTACTCATTTTTACTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGACCCCCTTTTTATAAAGAAACAAAAAATATTTCAAGTCTTTTAGTTTAACACATAA
TCATTAAGCACCTAAAAGAATATTTTACAAGCAATAGTATTTCAACAGTGTATTGCTAAT
ATTTTTGATACAATGATTTCATATTGGAATCATGACCTGTGCAAAGACAGATCACTTTGA
TTGCTATACTAGTGGAACTTAAGCTAAATGTTTGCACATTCACATTCTCCTCACATTTAG
AACTCCTTCACGAAATGGTCAGCATCTCAGGCCCTAATTTATATTTTGAGATGTCCTATA
TTCCCCAGATATTGGGAAAAATAGTCCCTCCTTTTGGTTCTAAAGCATTAAAGAGCTGCT
ATAGACCTAAATCCCTTGATTGGTTTTAACTTAGAAGTTTAGCTCATGTCTTTCTATTTC
GGACCTTAATTAAGTTCTGGCGTAATCTAAAGCTTTTTCCAAGATGTGTTTTGTCTCACT
GGATCATCTTAACGACTTAAAAGTCTTGATATTCTAGAATTTGTACTCATTTTTACTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-197, - strand, RNAz p=0.50693

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-197, - strand, RNAz p=0.50693

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-540, gnl|bosTau2|chr16 (54973710-54974233)
               

               
               8-540, gnl|Hg17|chr1 (207876727-207877275)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-540, gnl|bosTau2|chr16 (54973710-54974233)
               

               
               8-540, gnl|Hg17|chr1 (207876727-207877275)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               spl (0.143184)

	8-540, gnl\|bosTau2\|chr16 (54973710-54974233)
	8-540, gnl\|Hg17\|chr1 (207876727-207877275)