Non-Coding RNA Search

Ss1.1-rspl04_a23.5

Sequence:


               
               AGCTCATGGCAACACTGGATCCTTATTAACCCATGGAGCAGGGTCAGGGATCAGACCTGC
GTCCTCATGGATACTAGTCAGGTTCGTTAACCACGGAGGCATGATGGGAACTCCGAAAGA
ATGTTATTATAAGTGAGTTTTTGAAGGATCCAAGAAGGCAAAAGATGAGTCCTGAGCTAT
TCCTGAAGGATAAGGATTAGTAGGGCTTAGGTAGAGTGATGGGCCATTCCAGCTGACTGG
CCCAGGTGGCATGAAGACGGGAAGGAGTCTGGAAAATACCATACCCTACCAATGCCACCT
CTAACCTGCAAGACTCAGCTCAGATGTTACCTGCTCTAGGAAGCATTCCCGGTCATCTCC
CCTCCATCTAGGTTGTTCCTCCCCTTGCTACCTTATCACTCTTCTTTCTGGTGTCACAGG
TACTAGATCAGCAGATATCAAAACATACTGAACTCCTTGTGGATTGAAACTGGAAAGCCA
GTGTTCCCAAACCTTTGAGAGACAGGCTAACCACATGGTGGATGAATAAACATAAGGATA
CATGAAGAAGGAGACCTGCCTGGCTAAAGCAGAAAGACTAATTGTAGGGACTGGGGACTG
GTCTTGATCAGTGTGTTCTGAAGCTGAGGAAAGGAGGCAGAACCATAGGCTGGCCACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCATGGCAACACTGGATCCTTATTAACCCATGGAGCAGGGTCAGGGATCAGACCTGC
GTCCTCATGGATACTAGTCAGGTTCGTTAACCACGGAGGCATGATGGGAACTCCGAAAGA
ATGTTATTATAAGTGAGTTTTTGAAGGATCCAAGAAGGCAAAAGATGAGTCCTGAGCTAT
TCCTGAAGGATAAGGATTAGTAGGGCTTAGGTAGAGTGATGGGCCATTCCAGCTGACTGG
CCCAGGTGGCATGAAGACGGGAAGGAGTCTGGAAAATACCATACCCTACCAATGCCACCT
CTAACCTGCAAGACTCAGCTCAGATGTTACCTGCTCTAGGAAGCATTCCCGGTCATCTCC
CCTCCATCTAGGTTGTTCCTCCCCTTGCTACCTTATCACTCTTCTTTCTGGTGTCACAGG
TACTAGATCAGCAGATATCAAAACATACTGAACTCCTTGTGGATTGAAACTGGAAAGCCA
GTGTTCCCAAACCTTTGAGAGACAGGCTAACCACATGGTGGATGAATAAACATAAGGATA
CATGAAGAAGGAGACCTGCCTGGCTAAAGCAGAAAGACTAATTGTAGGGACTGGGGACTG
GTCTTGATCAGTGTGTTCTGAAGCTGAGGAAAGGAGGCAGAACCATAGGCTGGCCACTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               193-309, - strand, RNAz p=0.996195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-309, - strand, RNAz p=0.996195

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               115-547, gnl|bosTau2|chr2 (78608918-78609337)
               

               
               115-547, gnl|Hg17|chr1 (26780000-26780409)
               

               
               115-547, gnl|Mm7|chr4 (133068574-133068218)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-547, gnl|bosTau2|chr2 (78608918-78609337)
               

               
               115-547, gnl|Hg17|chr1 (26780000-26780409)
               

               
               115-547, gnl|Mm7|chr4 (133068574-133068218)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.286369)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)

	115-547, gnl\|bosTau2\|chr2 (78608918-78609337)
	115-547, gnl\|Hg17\|chr1 (26780000-26780409)
	115-547, gnl\|Mm7\|chr4 (133068574-133068218)