Non-Coding RNA Search

Ss1.1-rspl04_b13.5

Sequence:


               
               CCCGCCACGGCGTTCTCGGAGCCCACAGGCGCGGCGCGGGCGAGGGCGGCGGGAAGCCCT
CTGCCTGCCAGAACCGGGACAGACGCCGGGACGCGCAGACACACGGACACGCGGAAGCAG
GCGCCCTGGGCCATCCCCCCGGGACGCCCCCGAGGGAGGGAGCCTGCGGCAGCCCGCGGC
CGGGCTGCCGGGGTGGCCGCCGCGAGGAAAAGGGACGAACGTCAAAGATCTCACAACACA
AAGCAAACTTGATCAAAACTGGTGCTTACGGTTTGGTGATTCCCCACAGTTCCACGTCCC
CGTGCAGACCTCTCCTCTTGTAGCTTCTTTCTTTTCGAGAGCCAGTCGCTGCGGCTCCGG
CCCGCCTCTGATCGCGGCCGTGCGCGGCGCGGCGCGGGTGGGAGACGGTGGGCGCGGGTG
AGGAAGACAAACTGGCCGCGAAGCGAAGTGGGAGCCCGCGGAGCCGGCTTGTTTGCTCCC
AGCCGGCGGACGATGCGCGTTTGTGCCTTTTTTTTAATCGCTCGGATGGATTTTCGTGGC
TGGGTTTTCTGAAGTCTGAGGAACAATGCCTTAAGAAAAAATAAACCGCAGGAAGGGGTG
GGACAGGTCCCCGAGGCCGGCACGTGCTGGCCTGGCGCTCCCGGAGCGGCCCGGGGCCCG
GCCGGCAGCCCGCGAGGGCGAGGTCCTGCCACCCTGTCTTTGCTTTATTGCTGTTGAAGA
AACATGGAGGTAGTTCCAAAAAAAGTGGTAAATACTGTCGGGGGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCCACGGCGTTCTCGGAGCCCACAGGCGCGGCGCGGGCGAGGGCGGCGGGAAGCCCT
CTGCCTGCCAGAACCGGGACAGACGCCGGGACGCGCAGACACACGGACACGCGGAAGCAG
GCGCCCTGGGCCATCCCCCCGGGACGCCCCCGAGGGAGGGAGCCTGCGGCAGCCCGCGGC
CGGGCTGCCGGGGTGGCCGCCGCGAGGAAAAGGGACGAACGTCAAAGATCTCACAACACA
AAGCAAACTTGATCAAAACTGGTGCTTACGGTTTGGTGATTCCCCACAGTTCCACGTCCC
CGTGCAGACCTCTCCTCTTGTAGCTTCTTTCTTTTCGAGAGCCAGTCGCTGCGGCTCCGG
CCCGCCTCTGATCGCGGCCGTGCGCGGCGCGGCGCGGGTGGGAGACGGTGGGCGCGGGTG
AGGAAGACAAACTGGCCGCGAAGCGAAGTGGGAGCCCGCGGAGCCGGCTTGTTTGCTCCC
AGCCGGCGGACGATGCGCGTTTGTGCCTTTTTTTTAATCGCTCGGATGGATTTTCGTGGC
TGGGTTTTCTGAAGTCTGAGGAACAATGCCTTAAGAAAAAATAAACCGCAGGAAGGGGTG
GGACAGGTCCCCGAGGCCGGCACGTGCTGGCCTGGCGCTCCCGGAGCGGCCCGGGGCCCG
GCCGGCAGCCCGCGAGGGCGAGGTCCTGCCACCCTGTCTTTGCTTTATTGCTGTTGAAGA
AACATGGAGGTAGTTCCAAAAAAAGTGGTAAATACTGTCGGGGGTTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-768, gnl|bosTau2|chr3 (85158982-85158205)
               

               
               15-768, gnl|Hg17|chr2 (239710946-239710090)
               

               
               15-768, gnl|Mm7|chr1 (91840953-91840204)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-768, gnl|bosTau2|chr3 (85158982-85158205)
               

               
               15-768, gnl|Hg17|chr2 (239710946-239710090)
               

               
               15-768, gnl|Mm7|chr1 (91840953-91840204)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               sug (0.127291)

	15-768, gnl\|bosTau2\|chr3 (85158982-85158205)
	15-768, gnl\|Hg17\|chr2 (239710946-239710090)
	15-768, gnl\|Mm7\|chr1 (91840953-91840204)