Non-Coding RNA Search

Ss1.1-rspl04_e18.5

Sequence:


               
               TTAAGGTGGAGGAAACGTGACAGAGAGTTAAACAGCCAGGATCTATTTATTATACTTCCG
ATCTGCTTCTCGCCCTTTTCTTAGTTTTCCTTTTTCATTCAAAGACCACACCCCACCCCA
CCCCCAGTGTTATGAAGGCGTCCAGTCTGGGAACGGGGGACTCGGGAAAGGCAGCGCCCC
ATCACTTGGGCCCCAGTTCTCTAACGTGCTTTGTTCCTCAGTGTCCAACGTGGCCAAGTC
TGTACACACCATTCACCAGGCTGCACTGCTCAGTTTGGACTTTGTCCCTGGTATCATTTG
CATTGAAAGACCTTATGAAATAAAAAGGCTCTGCTAGAACTGATGTTAGCACATTCCACC
GAGCAGAACTAGCAAACTGACACTTCGGAAATTGCTTACTGGACTGAATAAACTCTCTTC
TGTCCAGTTAAAAAGGGTTTTTCTCTTTGTTAAAGTTTTATTTGTCCCGTCACATTCATG
GTCTAAACTGGGTGGAAAGAATAAGAAAACTGTCTTGACAGGCCGGCAGCAGCGCCTGCA
GGGAAGGATTTTATCCAGGCTCCCACCGGCGGTCACGTTCATCGAGGGGCCAGACCGTGG
AAGCAAGGAAACCCACCAAGTCGGTTCCCCAGTGACTGTCGGAACGTGTCGGAGGCCAAA
GTACACCCTCTGCCAACACACACCCTCTTAGAAACACACACCCTTCAGCTACATGAAACA
CCGGACTTCATTTCCTGAGAGGGGAAATGAAGGCGCGTGTCAGAAAGACACGCGACTGTA
AAATGACCACGTGCGCTGACCTGGCACAGGAACGCTGCTGGACGCACAGCCCTGACGCCT
TTTAAGCCGGTGGTGTCGCCCACCACGCTTCCTTGTGCTGCTTGTCCCGTGTGGGAGATG
ATTAAGCTCAGACCTGCTGCTCATCTTCCAGGGCTTTCTAAGGCGACGTGATGAACAGCA
CTTGGCCTGCTGCTTTTGGCTTCCTCGGTGGTTGTAGCTAGACGCTAGCCCGGTGTTTGA
AGGACATGGATTCTGGTGGAGACATGTCTGTATCCCTTCGGGATCTCTCCTCCCATTACC
CTGTGAATAGTAAATACAAACGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGGTGGAGGAAACGTGACAGAGAGTTAAACAGCCAGGATCTATTTATTATACTTCCG
ATCTGCTTCTCGCCCTTTTCTTAGTTTTCCTTTTTCATTCAAAGACCACACCCCACCCCA
CCCCCAGTGTTATGAAGGCGTCCAGTCTGGGAACGGGGGACTCGGGAAAGGCAGCGCCCC
ATCACTTGGGCCCCAGTTCTCTAACGTGCTTTGTTCCTCAGTGTCCAACGTGGCCAAGTC
TGTACACACCATTCACCAGGCTGCACTGCTCAGTTTGGACTTTGTCCCTGGTATCATTTG
CATTGAAAGACCTTATGAAATAAAAAGGCTCTGCTAGAACTGATGTTAGCACATTCCACC
GAGCAGAACTAGCAAACTGACACTTCGGAAATTGCTTACTGGACTGAATAAACTCTCTTC
TGTCCAGTTAAAAAGGGTTTTTCTCTTTGTTAAAGTTTTATTTGTCCCGTCACATTCATG
GTCTAAACTGGGTGGAAAGAATAAGAAAACTGTCTTGACAGGCCGGCAGCAGCGCCTGCA
GGGAAGGATTTTATCCAGGCTCCCACCGGCGGTCACGTTCATCGAGGGGCCAGACCGTGG
AAGCAAGGAAACCCACCAAGTCGGTTCCCCAGTGACTGTCGGAACGTGTCGGAGGCCAAA
GTACACCCTCTGCCAACACACACCCTCTTAGAAACACACACCCTTCAGCTACATGAAACA
CCGGACTTCATTTCCTGAGAGGGGAAATGAAGGCGCGTGTCAGAAAGACACGCGACTGTA
AAATGACCACGTGCGCTGACCTGGCACAGGAACGCTGCTGGACGCACAGCCCTGACGCCT
TTTAAGCCGGTGGTGTCGCCCACCACGCTTCCTTGTGCTGCTTGTCCCGTGTGGGAGATG
ATTAAGCTCAGACCTGCTGCTCATCTTCCAGGGCTTTCTAAGGCGACGTGATGAACAGCA
CTTGGCCTGCTGCTTTTGGCTTCCTCGGTGGTTGTAGCTAGACGCTAGCCCGGTGTTTGA
AGGACATGGATTCTGGTGGAGACATGTCTGTATCCCTTCGGGATCTCTCCTCCCATTACC
CTGTGAATAGTAAATACAAACGGG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               347-448, - strand, RNAz p=0.505185
               

               
               792-890, - strand, RNAz p=0.632265
               

               
               959-1104, + strand, RNAz p=0.916683

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-448, - strand, RNAz p=0.505185
               

               
               792-890, - strand, RNAz p=0.632265
               

               
               959-1104, + strand, RNAz p=0.916683

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1049-1128, + strand, RNAmicro p=0.918131

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1049-1128, + strand, RNAmicro p=0.918131

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-1104, gnl|bosTau2|chrX (40504555-40505627)
               

               
               1-1104, gnl|canFam2|chrX (12934655-12935733)
               

               
               1-1104, gnl|dasNov1|scaffold_24214 (3569-2482)
               

               
               1-1104, gnl|echTel1|scaffold_320901 (54436-53350)
               

               
               1-1104, gnl|galGal2|chr1 (114721888-114720771)
               

               
               1-1104, gnl|hg17|chrX (16620548-16621723)
               

               
               1-1104, gnl|Hg17|chrX (16620594-16621685)
               

               
               1-1104, gnl|loxAfr1|scaffold_1840 (78099-79232)
               

               
               1-1104, gnl|mm7|chrX (157554661-157553840)
               

               
               1-1104, gnl|monDom2|scaffold_25 (22864595-22863482)
               

               
               1-1104, gnl|oryCun1|scaffold_101247 (1520-2613)
               

               
               1-1104, gnl|panTro1|chrX (17104817-17105987)
               

               
               1-1104, gnl|rheMac2|chrX (14517301-14518472)
               

               
               1-1104, gnl|rn3|chrX (52721459-52722444)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chrX (40504555-40505627)
               

               
               1-1104, gnl|canFam2|chrX (12934655-12935733)
               

               
               1-1104, gnl|dasNov1|scaffold_24214 (3569-2482)
               

               
               1-1104, gnl|echTel1|scaffold_320901 (54436-53350)
               

               
               1-1104, gnl|galGal2|chr1 (114721888-114720771)
               

               
               1-1104, gnl|hg17|chrX (16620548-16621723)
               

               
               1-1104, gnl|Hg17|chrX (16620594-16621685)
               

               
               1-1104, gnl|loxAfr1|scaffold_1840 (78099-79232)
               

               
               1-1104, gnl|mm7|chrX (157554661-157553840)
               

               
               1-1104, gnl|monDom2|scaffold_25 (22864595-22863482)
               

               
               1-1104, gnl|oryCun1|scaffold_101247 (1520-2613)
               

               
               1-1104, gnl|panTro1|chrX (17104817-17105987)
               

               
               1-1104, gnl|rheMac2|chrX (14517301-14518472)
               

               
               1-1104, gnl|rn3|chrX (52721459-52722444)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	347-448, - strand, RNAz p=0.505185
	792-890, - strand, RNAz p=0.632265
	959-1104, + strand, RNAz p=0.916683

	1-1104, gnl\|bosTau2\|chrX (40504555-40505627)
	1-1104, gnl\|canFam2\|chrX (12934655-12935733)
	1-1104, gnl\|dasNov1\|scaffold_24214 (3569-2482)
	1-1104, gnl\|echTel1\|scaffold_320901 (54436-53350)
	1-1104, gnl\|galGal2\|chr1 (114721888-114720771)
	1-1104, gnl\|hg17\|chrX (16620548-16621723)
	1-1104, gnl\|Hg17\|chrX (16620594-16621685)
	1-1104, gnl\|loxAfr1\|scaffold_1840 (78099-79232)
	1-1104, gnl\|mm7\|chrX (157554661-157553840)
	1-1104, gnl\|monDom2\|scaffold_25 (22864595-22863482)
	1-1104, gnl\|oryCun1\|scaffold_101247 (1520-2613)
	1-1104, gnl\|panTro1\|chrX (17104817-17105987)
	1-1104, gnl\|rheMac2\|chrX (14517301-14518472)
	1-1104, gnl\|rn3\|chrX (52721459-52722444)