Ss1.1-rspl04_e2.5
|
AAAGTCGAAGGCCCTGCTGGTCCTCCTCTCCCTGGGCTGCTTTTCCAGCGTGGCTGAGAC
GCTTCACAGCATGAGGTACTTCGACAGAGCGGCCTTGTTTGTGGAAGCTTGTCTCAAGTA
CGGGGCGATTGAAGTCAGCCAGGACACTGAGAAACTCATCGCCGCTATATATGCAGATTA
TGCCCGAAGTTTGAAGAACCTCGGATTTAAACAGGGAGCCGTTCTTTTTGCTTCAAAAGC
TGGAGCAGCTGGCAGAGATTTGCTGAACGAGCTGGAATCCCCCAAGCAAGAACTGACTGC
ACAGTGACAGGTTCTTGTGTGTAGGTGGCCGGGGTGTTGGTCTGGCTGTGGATGGTCGCA
GCCCAGATGCACGAGGTTGCCGTCCCTCCGGGGGCCGTGTCACCACACGCGCTCGGCGGT
ATATGGACGTTTACACCGATGGAGCCAGTTCCGGGACCTGTATTTATCCGACAAAGATGG
GGACACTTCAGGTTTTGTAAGTGTGTAACATTTTATACTTTTGGAGACAGAGCTTTAAGC
GTCCCTGGAAATACTTTTAATTTTTTTAAATCTAAAATTCAAGCAACTGAATTGCTTTTC
TCACCGAGTAGACTTAGATCCGTAGTCAGAGCAGTTTGTGAGGCCTGTTCTGGATTATGT
GCCCCGCCCGTGCTTAGACAGCCACTCCATACACACCGAGAGAGAGAACCACGTGAGCAG
AAGGGTGACTGACCGTGACCGTCCCTTGTTTTCTTACCTGGAAAACACAGCCGATGATTT
CCTGAGTTAGGCAGTTGCTAAATTTTGTAATTTCAGGCTCATGGGCTCATAGAGAAACGT
TAAGCTTTATACTTTGTCCCAGTGTGTGGGGTCTTGGATATTTTAGACTCTAACTCCTTC
TATGGTGCATTACAGTAACCTCCTCTTGGAAGGCTCTGTGATTTAATTTTCTGTCCTTGT
GTTCTTCCAGTGACCAAACTATATGAAATGTGACTCTTGTAAATTATTGCTGATAATTTA
AATGTGTTTAACTTACAGAAATGATAAATAAAAAGGGAGTTAATCCCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAGTCGAAGGCCCTGCTGGTCCTCCTCTCCCTGGGCTGCTTTTCCAGCGTGGCTGAGAC
GCTTCACAGCATGAGGTACTTCGACAGAGCGGCCTTGTTTGTGGAAGCTTGTCTCAAGTA
CGGGGCGATTGAAGTCAGCCAGGACACTGAGAAACTCATCGCCGCTATATATGCAGATTA
TGCCCGAAGTTTGAAGAACCTCGGATTTAAACAGGGAGCCGTTCTTTTTGCTTCAAAAGC
TGGAGCAGCTGGCAGAGATTTGCTGAACGAGCTGGAATCCCCCAAGCAAGAACTGACTGC
ACAGTGACAGGTTCTTGTGTGTAGGTGGCCGGGGTGTTGGTCTGGCTGTGGATGGTCGCA
GCCCAGATGCACGAGGTTGCCGTCCCTCCGGGGGCCGTGTCACCACACGCGCTCGGCGGT
ATATGGACGTTTACACCGATGGAGCCAGTTCCGGGACCTGTATTTATCCGACAAAGATGG
GGACACTTCAGGTTTTGTAAGTGTGTAACATTTTATACTTTTGGAGACAGAGCTTTAAGC
GTCCCTGGAAATACTTTTAATTTTTTTAAATCTAAAATTCAAGCAACTGAATTGCTTTTC
TCACCGAGTAGACTTAGATCCGTAGTCAGAGCAGTTTGTGAGGCCTGTTCTGGATTATGT
GCCCCGCCCGTGCTTAGACAGCCACTCCATACACACCGAGAGAGAGAACCACGTGAGCAG
AAGGGTGACTGACCGTGACCGTCCCTTGTTTTCTTACCTGGAAAACACAGCCGATGATTT
CCTGAGTTAGGCAGTTGCTAAATTTTGTAATTTCAGGCTCATGGGCTCATAGAGAAACGT
TAAGCTTTATACTTTGTCCCAGTGTGTGGGGTCTTGGATATTTTAGACTCTAACTCCTTC
TATGGTGCATTACAGTAACCTCCTCTTGGAAGGCTCTGTGATTTAATTTTCTGTCCTTGT
GTTCTTCCAGTGACCAAACTATATGAAATGTGACTCTTGTAAATTATTGCTGATAATTTA
AATGTGTTTAACTTACAGAAATGATAAATAAAAAGGGAGTTAATCCCGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
150-299, gnl|bosTau2|chr26 (27362218-27362069) |
|
150-299, gnl|canFam2|chr28 (33827326-33827483) |
|
150-299, gnl|dasNov1|scaffold_1373 (37290-37447) |
|
150-299, gnl|echTel1|scaffold_276150 (60743-60881) |
|
150-299, gnl|fr1|chrUn (247891343-247891491) |
|
150-299, gnl|galGal2|chr6 (29709256-29709414) |
|
150-299, gnl|hg17|chr10 (122658025-122658182) |
|
150-299, gnl|Hg17|chr10 (122658058-122658203) |
|
150-299, gnl|loxAfr1|scaffold_53865 (6102-6259) |
|
150-299, gnl|mm7|chr7 (125756366-125756523) |
|
150-299, gnl|Mm7|chr7 (125756399-125756546) |
|
150-299, gnl|monDom2|scaffold_14 (38818481-38818328) |
|
150-299, gnl|oryCun1|scaffold_208624 (72214-72365) |
|
150-299, gnl|panTro1|chr8 (124980422-124980579) |
|
150-299, gnl|rheMac2|chr9 (120537468-120537625) |
|
150-299, gnl|rn3|chr1 (189044762-189044921) |
|
150-299, gnl|tetNig1|chr17 (1309912-1310058) |
|
150-299, gnl|xenTro1|scaffold_677 (661815-661658) |
| |
|
327-1067, gnl|bosTau2|chr26 (27362016-27361275) |
|
327-1067, gnl|Hg17|chr10 (122658256-122659021) |
|
327-1067, gnl|Mm7|chr7 (125756592-125757311) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
150-299, gnl|bosTau2|chr26 (27362218-27362069) |
|
150-299, gnl|canFam2|chr28 (33827326-33827483) |
|
150-299, gnl|dasNov1|scaffold_1373 (37290-37447) |
|
150-299, gnl|echTel1|scaffold_276150 (60743-60881) |
|
150-299, gnl|fr1|chrUn (247891343-247891491) |
|
150-299, gnl|galGal2|chr6 (29709256-29709414) |
|
150-299, gnl|hg17|chr10 (122658025-122658182) |
|
150-299, gnl|Hg17|chr10 (122658058-122658203) |
|
150-299, gnl|loxAfr1|scaffold_53865 (6102-6259) |
|
150-299, gnl|mm7|chr7 (125756366-125756523) |
|
150-299, gnl|Mm7|chr7 (125756399-125756546) |
|
150-299, gnl|monDom2|scaffold_14 (38818481-38818328) |
|
150-299, gnl|oryCun1|scaffold_208624 (72214-72365) |
|
150-299, gnl|panTro1|chr8 (124980422-124980579) |
|
150-299, gnl|rheMac2|chr9 (120537468-120537625) |
|
150-299, gnl|rn3|chr1 (189044762-189044921) |
|
150-299, gnl|tetNig1|chr17 (1309912-1310058) |
|
150-299, gnl|xenTro1|scaffold_677 (661815-661658) |
| |
|
327-1067, gnl|bosTau2|chr26 (27362016-27361275) |
|
327-1067, gnl|Hg17|chr10 (122658256-122659021) |
|
327-1067, gnl|Mm7|chr7 (125756592-125757311) |
|
lyg (0.266205) |
|
col (0.195008) |
|
fhi (0.169578) |
|
lun (0.150489) |
|
spl (0.143184) |
|
pla (0.133672) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
lyg (0.266205) |
|
col (0.195008) |
|
fhi (0.169578) |
|
lun (0.150489) |
|
spl (0.143184) |
|
pla (0.133672) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
cty (0.10408) |
|
nbm (0.0993246) |
