Non-Coding RNA Search

Ss1.1-rspl04_g8.5

Sequence:


               
               CACGCCCTTGTGATGGGGACAGGGGCCGGCATGCAAGTTGTAGCTCAAAGGCTGGAGTCC
CGCGTGGTCGGGGGCGGGACCGAAGGAGGAAAACATCAACATCTGGGCGGGGCGTCGGTT
CGGAGCTAATCATGCTGGTTGAGGTCGAAGTCCTGAGTGCCCTTTCTTCTACCCACACAG
CTCGATCCCTGAGCTGGCGGCCCCTGCACAACGATGAAGAGGACCCGCGACGAGGTGGAC
GCGACGCTGCAGATCGCCAAGGTGAACACGGCCGAGCTGCTGCCCACGGTGCACTGCTTG
GGCTTCGGCCCTGGGGCCAGCGCCGCCGCCGGCGACTACTGCCTGCTCCAGCTGGAGCCT
GCACTGTGCCAGCAGCTGGAGGCGGGACGCAGTCTTGTGATTCGTGGTGATAAGGATGAA
CAGGCAGTGCTGTGCAGTAAAGACAAAACGTATGACTTGAAAATAGCAGACACTTCCAAT
ATGTTACTTTTTCTTCCTGACTGTAAAACTCCAGACCAGCTGAAGATGGAAGAAACCCAC
TGTAACATTATTCACTCCGAGATCTTTGGTTTTTCTAATAATTACTGGGAATTAAGAAGA
TGTAGACCTAAATTAAAGAAGTTAAAGAAACTTCTGATGGAAAATACCTATGAAGGACCT
GATAGTCAAAAAGAAAAGGATTCAAATCGATCAAAATATACGACTGAAGATTTGCTTGAT
CAAATTCAGGCAAGTGAGGAAGAAATAATGGCCCAATTACAAGTTCTAAATGCCTGTGAG
ATTGGAGGTTATTGGAGGATTCTTGAATTTGATTATGAGATGAAACTTCTGAATCATGTT
ACTCAGCTCGTGGATTCCGAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGCCCTTGTGATGGGGACAGGGGCCGGCATGCAAGTTGTAGCTCAAAGGCTGGAGTCC
CGCGTGGTCGGGGGCGGGACCGAAGGAGGAAAACATCAACATCTGGGCGGGGCGTCGGTT
CGGAGCTAATCATGCTGGTTGAGGTCGAAGTCCTGAGTGCCCTTTCTTCTACCCACACAG
CTCGATCCCTGAGCTGGCGGCCCCTGCACAACGATGAAGAGGACCCGCGACGAGGTGGAC
GCGACGCTGCAGATCGCCAAGGTGAACACGGCCGAGCTGCTGCCCACGGTGCACTGCTTG
GGCTTCGGCCCTGGGGCCAGCGCCGCCGCCGGCGACTACTGCCTGCTCCAGCTGGAGCCT
GCACTGTGCCAGCAGCTGGAGGCGGGACGCAGTCTTGTGATTCGTGGTGATAAGGATGAA
CAGGCAGTGCTGTGCAGTAAAGACAAAACGTATGACTTGAAAATAGCAGACACTTCCAAT
ATGTTACTTTTTCTTCCTGACTGTAAAACTCCAGACCAGCTGAAGATGGAAGAAACCCAC
TGTAACATTATTCACTCCGAGATCTTTGGTTTTTCTAATAATTACTGGGAATTAAGAAGA
TGTAGACCTAAATTAAAGAAGTTAAAGAAACTTCTGATGGAAAATACCTATGAAGGACCT
GATAGTCAAAAAGAAAAGGATTCAAATCGATCAAAATATACGACTGAAGATTTGCTTGAT
CAAATTCAGGCAAGTGAGGAAGAAATAATGGCCCAATTACAAGTTCTAAATGCCTGTGAG
ATTGGAGGTTATTGGAGGATTCTTGAATTTGATTATGAGATGAAACTTCTGAATCATGTT
ACTCAGCTCGTGGATTCCGAATCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55631144|ref|XP_519925.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55631144|ref|XP_519925.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               389-561, gnl|bosTau2|chr14 (49463369-49463197)
               

               
               389-561, gnl|Hg17|chr8 (120934640-120934468)
               

               
               389-561, gnl|Mm7|chr15 (55149247-55149075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               389-561, gnl|bosTau2|chr14 (49463369-49463197)
               

               
               389-561, gnl|Hg17|chr8 (120934640-120934468)
               

               
               389-561, gnl|Mm7|chr15 (55149247-55149075)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               pla (0.133672)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               clu (0.119646)

	389-561, gnl\|bosTau2\|chr14 (49463369-49463197)
	389-561, gnl\|Hg17\|chr8 (120934640-120934468)
	389-561, gnl\|Mm7\|chr15 (55149247-55149075)