Ss1.1-rspl04_i23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGTGGTGAGCGCTGCTGGCGGAGGCAGTTCAGAGACCGAGGAGAATAATGAATGGAG CAGGGAGACCCTCGCGTATTGACAGCCGCGAGCGGGTTCTCAAGTTAGGCGAGAGTTTTG AGAAGCAGCCGCGCTGCGCCTTCCACACTGTGCGCTATGACTTCAAACCTGCTTCTATTG ACACTTCTTGTGAAGGAGAGCTTGAGGTTGGCAAAGGTGAACAGGTGACAATTACTCTGC CAAATATAGAAGGTTCAACTACACCAGTAACTGTTTTCAAAGGTTCAAAGAAACCTTACT TAAAAGAATGCATTTTGATTATTAACCATGATACTGGGGAATGTCGACTAGAAAAACTCA GCAACAACATCACTGTAAAAAAAACAAGAGTTGAAGGAAGCAGTAAGATTCAGTTTCGTA TAGAGCAACAGCAGCAACAAATGCGAAATTTAGCTAAGACTCCCAATCTTGTAAAACATT CTCCACCTGAAGACAAGATGTCCCCAGCATCTCCCATGGATGATATTGAAAGAGAACTGA AGGCAGAAGCTAGTCTAATGGACCAGATGAGTAGTTGCGATAGTTCATCGGATTCCAAAA GTTCATCATCTTCAAGTAGTGAGGATAGTTCCAGTGATTCAGAAGCCGAAGAGTGCAGAT CCTCTCCTGATCCAGGGAATTACATCTCGGAACATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGTGGTGAGCGCTGCTGGCGGAGGCAGTTCAGAGACCGAGGAGAATAATGAATGGAG CAGGGAGACCCTCGCGTATTGACAGCCGCGAGCGGGTTCTCAAGTTAGGCGAGAGTTTTG AGAAGCAGCCGCGCTGCGCCTTCCACACTGTGCGCTATGACTTCAAACCTGCTTCTATTG ACACTTCTTGTGAAGGAGAGCTTGAGGTTGGCAAAGGTGAACAGGTGACAATTACTCTGC CAAATATAGAAGGTTCAACTACACCAGTAACTGTTTTCAAAGGTTCAAAGAAACCTTACT TAAAAGAATGCATTTTGATTATTAACCATGATACTGGGGAATGTCGACTAGAAAAACTCA GCAACAACATCACTGTAAAAAAAACAAGAGTTGAAGGAAGCAGTAAGATTCAGTTTCGTA TAGAGCAACAGCAGCAACAAATGCGAAATTTAGCTAAGACTCCCAATCTTGTAAAACATT CTCCACCTGAAGACAAGATGTCCCCAGCATCTCCCATGGATGATATTGAAAGAGAACTGA AGGCAGAAGCTAGTCTAATGGACCAGATGAGTAGTTGCGATAGTTCATCGGATTCCAAAA GTTCATCATCTTCAAGTAGTGAGGATAGTTCCAGTGATTCAGAAGCCGAAGAGTGCAGAT CCTCTCCTGATCCAGGGAATTACATCTCGGAACATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 533-651, + strand, RNAz p=0.884896 | |
| 594-696, - strand, RNAz p=0.756171 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 533-651, + strand, RNAz p=0.884896 | |
| 594-696, - strand, RNAz p=0.756171 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 2-160, gnl|bosTau2|chr1 (40098220-40098061) | |
| 2-160, gnl|Hg17|chr3 (123036775-123036932) | |
| 2-160, gnl|Mm7|chr16 (36536571-36536426) | |
| 252-388, gnl|bosTau2|chr1 (40075156-40075020) | |
| 252-388, gnl|canFam2|chr33 (28171457-28171617) | |
| 252-388, gnl|danRer3|chr9 (14795953-14795799) | |
| 252-388, gnl|dasNov1|scaffold_6016 (45841-46000) | |
| 252-388, gnl|echTel1|scaffold_281605 (45655-45814) | |
| 252-388, gnl|fr1|chrUn (188731387-188731231) | |
| 252-388, gnl|galGal2|chr7 (27020901-27021083) | |
| 252-388, gnl|hg17|chr3 (123056207-123056367) | |
| 252-388, gnl|Hg17|chr3 (123056225-123056360) | |
| 252-388, gnl|loxAfr1|scaffold_115743 (8311-8471) | |
| 252-388, gnl|mm7|chr16 (36519005-36518846) | |
| 252-388, gnl|Mm7|chr16 (36518986-36518851) | |
| 252-388, gnl|monDom2|scaffold_24 (18816305-18816135) | |
| 252-388, gnl|oryCun1|scaffold_83460 (5555-5395) | |
| 252-388, gnl|panTro1|chr2 (124747482-124747642) | |
| 252-388, gnl|rheMac2|chr2 (41852980-41853140) | |
| 252-388, gnl|rn3|chr11 (65842562-65842721) | |
| 252-388, gnl|tetNig1|chr2 (18239878-18239733) | |
| 533-696, gnl|bosTau2|chr1 (40063522-40063359) | |
| 533-696, gnl|canFam2|chr33 (28178170-28178333) | |
| 533-696, gnl|danRer3|chr9 (14793493-14793352) | |
| 533-696, gnl|echTel1|scaffold_11749 (871-1028) | |
| 533-696, gnl|fr1|chrUn (188730800-188730659) | |
| 533-696, gnl|galGal2|chr7 (27025394-27025554) | |
| 533-696, gnl|hg17|chr3 (123074053-123074216) | |
| 533-696, gnl|Hg17|chr3 (123074072-123074238) | |
| 533-696, gnl|loxAfr1|scaffold_1562 (1381-1222) | |
| 533-696, gnl|mm7|chr16 (36509237-36509086) | |
| 533-696, gnl|Mm7|chr16 (36509225-36509062) | |
| 533-696, gnl|monDom2|scaffold_24 (18795066-18794902) | |
| 533-696, gnl|oryCun1|scaffold_89176 (4264-4111) | |
| 533-696, gnl|panTro1|chr2 (124765343-124765506) | |
| 533-696, gnl|rheMac2|chr2 (41871052-41871214) | |
| 533-696, gnl|rn3|chr11 (65859885-65860036) | |
| 533-696, gnl|tetNig1|chr2 (18239322-18239198) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-160, gnl|bosTau2|chr1 (40098220-40098061) | |
| 2-160, gnl|Hg17|chr3 (123036775-123036932) | |
| 2-160, gnl|Mm7|chr16 (36536571-36536426) | |
| 252-388, gnl|bosTau2|chr1 (40075156-40075020) | |
| 252-388, gnl|canFam2|chr33 (28171457-28171617) | |
| 252-388, gnl|danRer3|chr9 (14795953-14795799) | |
| 252-388, gnl|dasNov1|scaffold_6016 (45841-46000) | |
| 252-388, gnl|echTel1|scaffold_281605 (45655-45814) | |
| 252-388, gnl|fr1|chrUn (188731387-188731231) | |
| 252-388, gnl|galGal2|chr7 (27020901-27021083) | |
| 252-388, gnl|hg17|chr3 (123056207-123056367) | |
| 252-388, gnl|Hg17|chr3 (123056225-123056360) | |
| 252-388, gnl|loxAfr1|scaffold_115743 (8311-8471) | |
| 252-388, gnl|mm7|chr16 (36519005-36518846) | |
| 252-388, gnl|Mm7|chr16 (36518986-36518851) | |
| 252-388, gnl|monDom2|scaffold_24 (18816305-18816135) | |
| 252-388, gnl|oryCun1|scaffold_83460 (5555-5395) | |
| 252-388, gnl|panTro1|chr2 (124747482-124747642) | |
| 252-388, gnl|rheMac2|chr2 (41852980-41853140) | |
| 252-388, gnl|rn3|chr11 (65842562-65842721) | |
| 252-388, gnl|tetNig1|chr2 (18239878-18239733) | |
| 533-696, gnl|bosTau2|chr1 (40063522-40063359) | |
| 533-696, gnl|canFam2|chr33 (28178170-28178333) | |
| 533-696, gnl|danRer3|chr9 (14793493-14793352) | |
| 533-696, gnl|echTel1|scaffold_11749 (871-1028) | |
| 533-696, gnl|fr1|chrUn (188730800-188730659) | |
| 533-696, gnl|galGal2|chr7 (27025394-27025554) | |
| 533-696, gnl|hg17|chr3 (123074053-123074216) | |
| 533-696, gnl|Hg17|chr3 (123074072-123074238) | |
| 533-696, gnl|loxAfr1|scaffold_1562 (1381-1222) | |
| 533-696, gnl|mm7|chr16 (36509237-36509086) | |
| 533-696, gnl|Mm7|chr16 (36509225-36509062) | |
| 533-696, gnl|monDom2|scaffold_24 (18795066-18794902) | |
| 533-696, gnl|oryCun1|scaffold_89176 (4264-4111) | |
| 533-696, gnl|panTro1|chr2 (124765343-124765506) | |
| 533-696, gnl|rheMac2|chr2 (41871052-41871214) | |
| 533-696, gnl|rn3|chr11 (65859885-65860036) | |
| 533-696, gnl|tetNig1|chr2 (18239322-18239198) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| spl (0.572738) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| cki (0.165235) | |
| lin (0.145603) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| cbl (0.114797) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.572738) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| cki (0.165235) | |
| lin (0.145603) | |
| pla (0.133672) | |
| pgl (0.118483) | |
| cbl (0.114797) |