Non-Coding RNA Search

Ss1.1-rspl04_i6.5

Sequence:


               
               CAAAAATTACCTGGCTTTCATCAACCACTGTTCTCATGTCAGAGGAAATTCCAATAGCTA
TGGTGTGCTGCCCACAGAGGAACCGGTCTATAATTGGAGAACTGTAATAAACGGTGCTGC
GGACCTCTATTTTGAAGGAAATATTCATCAGTCTCTGCAGAACATCCCTGAAAACCAGCT
GGTACAACCTGCTGTTCTTCAGCAAAAGGGAGGAAAAGGCAGGAAGAAGCTCCGACTGTT
TGAATACCTTCATGAATCCCTGTGCAATCCAGAGATGGCATCGTGTATTCAGTGGATAGA
CCAGACCAAAGGCATCTTTCAGTTCGTATCAAAAAACAAAGAAAAACTTGCCCAACTTTG
GGGGAAAAGAAAAGGCAACCGGAAGACCATGACTTACCAGAAAATGGCCAGAGCATTGAG
GAATTATGGAAGAACTGGGGAAATCATCAAAATCCGGAGAAAATTAACTTACCAGTTCAG
TGAGGCCATTCTCCAAAGACTTTCTCCATCATATTTCTTAGAAAAAGAATTCTTCTACTC
ACAGTATGTTCAACCTGATCAAGGATATCTCAGCTTAAATAACTGGAATGCAAATTATAA
TTGTGCATATGCCAATTACCATGAGCTAAGTCATGCTGATTGCTAAATATACTCTTACAT
TTCATAATTTTCTGGCATCAGAAATACTTGCAAATTTTAGGATTTTTCTCTGAAAGCAAA
TGCTGCAGGAAAAAAAAAAAACTTCATTATTGCTCTCTTTTATGAAGTAGGGTATAATCT
ATACTAACTTGGTGAGAAATTTTGCCAGTCAGCAAATTTAAAATGATCAAGTCCCATTTG
GAAATATGCATAAATGTCCTTCCTCTTACTATTGTCTATGCAGTACTTCTAGATTAATAA
TACCAGTAGAGATGACTTGATTTATATATTGGTTTAAACATTATTTTACTGTCACATACT
CAGACACAAAAATCACTCTAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAATTACCTGGCTTTCATCAACCACTGTTCTCATGTCAGAGGAAATTCCAATAGCTA
TGGTGTGCTGCCCACAGAGGAACCGGTCTATAATTGGAGAACTGTAATAAACGGTGCTGC
GGACCTCTATTTTGAAGGAAATATTCATCAGTCTCTGCAGAACATCCCTGAAAACCAGCT
GGTACAACCTGCTGTTCTTCAGCAAAAGGGAGGAAAAGGCAGGAAGAAGCTCCGACTGTT
TGAATACCTTCATGAATCCCTGTGCAATCCAGAGATGGCATCGTGTATTCAGTGGATAGA
CCAGACCAAAGGCATCTTTCAGTTCGTATCAAAAAACAAAGAAAAACTTGCCCAACTTTG
GGGGAAAAGAAAAGGCAACCGGAAGACCATGACTTACCAGAAAATGGCCAGAGCATTGAG
GAATTATGGAAGAACTGGGGAAATCATCAAAATCCGGAGAAAATTAACTTACCAGTTCAG
TGAGGCCATTCTCCAAAGACTTTCTCCATCATATTTCTTAGAAAAAGAATTCTTCTACTC
ACAGTATGTTCAACCTGATCAAGGATATCTCAGCTTAAATAACTGGAATGCAAATTATAA
TTGTGCATATGCCAATTACCATGAGCTAAGTCATGCTGATTGCTAAATATACTCTTACAT
TTCATAATTTTCTGGCATCAGAAATACTTGCAAATTTTAGGATTTTTCTCTGAAAGCAAA
TGCTGCAGGAAAAAAAAAAAACTTCATTATTGCTCTCTTTTATGAAGTAGGGTATAATCT
ATACTAACTTGGTGAGAAATTTTGCCAGTCAGCAAATTTAAAATGATCAAGTCCCATTTG
GAAATATGCATAAATGTCCTTCCTCTTACTATTGTCTATGCAGTACTTCTAGATTAATAA
TACCAGTAGAGATGACTTGATTTATATATTGGTTTAAACATTATTTTACTGTCACATACT
CAGACACAAAAATCACTCTAATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26225116|gb|AAN84476.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26225116|gb|AAN84476.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               536-655, - strand, RNAz p=0.95747

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-655, - strand, RNAz p=0.95747

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-198, gnl|bosTau2|chr3 (43610990-43610793)
               

               
               1-198, gnl|Hg17|chr11 (33765816-33765619)
               

               
               1-198, gnl|Mm7|chr6 (59162051-59161861)
               


               
               217-972, gnl|bosTau2|chr5 (41600087-41599333)
               

               
               217-972, gnl|Hg17|chr12 (100382588-100384297)
               


               
               219-485, gnl|bosTau2|chr15 (48973592-48973858)
               

               
               219-485, gnl|Hg17|chr11 (47333670-47333404)
               

               
               219-485, gnl|Mm7|chr2 (90965794-90966060)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-198, gnl|bosTau2|chr3 (43610990-43610793)
               

               
               1-198, gnl|Hg17|chr11 (33765816-33765619)
               

               
               1-198, gnl|Mm7|chr6 (59162051-59161861)
               


               
               217-972, gnl|bosTau2|chr5 (41600087-41599333)
               

               
               217-972, gnl|Hg17|chr12 (100382588-100384297)
               


               
               219-485, gnl|bosTau2|chr15 (48973592-48973858)
               

               
               219-485, gnl|Hg17|chr11 (47333670-47333404)
               

               
               219-485, gnl|Mm7|chr2 (90965794-90966060)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               pty (0.142714)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               pty (0.142714)

	1-198, gnl\|bosTau2\|chr3 (43610990-43610793)
	1-198, gnl\|Hg17\|chr11 (33765816-33765619)
	1-198, gnl\|Mm7\|chr6 (59162051-59161861)

	217-972, gnl\|bosTau2\|chr5 (41600087-41599333)
	217-972, gnl\|Hg17\|chr12 (100382588-100384297)

	219-485, gnl\|bosTau2\|chr15 (48973592-48973858)
	219-485, gnl\|Hg17\|chr11 (47333670-47333404)
	219-485, gnl\|Mm7\|chr2 (90965794-90966060)