Non-Coding RNA Search

Ss1.1-rspl04_j17.5

Sequence:


               
               GTCTTAGGGTACCAGTGTGATACCGTTTGCTTCCTGATGCGGGGCAAAGAGGCAGATAGT
CTTGGGGATGAGACTCGGCAGGGCCAGGACCCCAAAGGGTAGACTGGATGGAAGGACAAA
CTGCACGGGCAGATGCTTGTCTCAGAATAGGCATAAACCGAGTTCTGGAGCAGGGACATG
TGCTGCTGGGTTATAGGTAGCTTATCCTTAGAATCATGTGACCAGAGGAAAAAATTTTTT
GACTTTGCCCACGCATAGAATTCTTCCTAATGTCAGAACAGAGAGTGAATTCCAGTCCTG
CCGTGACCAGTAAAACACTGTTGCCTCACCATGTCCAAGGTGTTCTTGTCCATCAGAGGT
CCTCTCACTTAGCGCCAAGTACATCAACACATACTCGACTTTCAAGCTGGAAGAAGTGAG
CAGTGGTGGAGTCGGGAGCTGTAAGGCTGGTACCCTGCTACCCTGAGTTCTCCTGGGCCT
GGAAGTGACATCCTTTCCCCTGATGATGCCAGGCAACTTAGTACGTTTTTATTAAAGCAT
TTTCTACCAGCAAAGCAAACACTGGGAAACACATTTCTATTTGCATTTGGGTTTCAAGTG
ATAGAAAAATGGAGCTTGGGCACTGAAAGAGGTGCAATTACCCAGAAGATTTATTAGTCC
TAATTCAATCCCACTTTTCAAACACTAAAAATTATATGCATTATGTGTTTTCTTCTCTCT
CTCTCTTCCTACAACAGTGTTCATACTCATACTTGAGCTGGGTAGAGTCCATCCTTTCAT
CCATCCATCCATCCTTAAAACATATATTTATTGAGTACCTATTGTGTACAGAGGTAACGT
AGTCTCTGTCCCCATAGAACTGATTGAATAGTGAAGACAAACCTTTAAAAAAACTTAAAC
TTACAAATCCTGTTCATCACAAGTGGTGTTTATTGCAATCATCTCCTGGTTTGCAACCTC
TTTTCTCAACAGAACATATGTTGCAAGACATTCCCATGGGGGCATTTGGATTTTGGCAAA
TAGCTGAAATGGCCCTCGGTTGTACACACTTCTTTGCATTCCAGCTGTCACTCTGCCCCT
TTCCACAACTAATTGCAACAGATTGTTGAGTCATAACACCAGTGGGAATTTCTGGAAAAA
TCAGGCACAGAAAAACCTCGGCTCAGAATACTTTGATGCCGCCTCACCTCTGTGTTTCCT
TGGCTTTTCATGGACGTGTTTTTAAATAAAGAACAATTCTTAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTAGGGTACCAGTGTGATACCGTTTGCTTCCTGATGCGGGGCAAAGAGGCAGATAGT
CTTGGGGATGAGACTCGGCAGGGCCAGGACCCCAAAGGGTAGACTGGATGGAAGGACAAA
CTGCACGGGCAGATGCTTGTCTCAGAATAGGCATAAACCGAGTTCTGGAGCAGGGACATG
TGCTGCTGGGTTATAGGTAGCTTATCCTTAGAATCATGTGACCAGAGGAAAAAATTTTTT
GACTTTGCCCACGCATAGAATTCTTCCTAATGTCAGAACAGAGAGTGAATTCCAGTCCTG
CCGTGACCAGTAAAACACTGTTGCCTCACCATGTCCAAGGTGTTCTTGTCCATCAGAGGT
CCTCTCACTTAGCGCCAAGTACATCAACACATACTCGACTTTCAAGCTGGAAGAAGTGAG
CAGTGGTGGAGTCGGGAGCTGTAAGGCTGGTACCCTGCTACCCTGAGTTCTCCTGGGCCT
GGAAGTGACATCCTTTCCCCTGATGATGCCAGGCAACTTAGTACGTTTTTATTAAAGCAT
TTTCTACCAGCAAAGCAAACACTGGGAAACACATTTCTATTTGCATTTGGGTTTCAAGTG
ATAGAAAAATGGAGCTTGGGCACTGAAAGAGGTGCAATTACCCAGAAGATTTATTAGTCC
TAATTCAATCCCACTTTTCAAACACTAAAAATTATATGCATTATGTGTTTTCTTCTCTCT
CTCTCTTCCTACAACAGTGTTCATACTCATACTTGAGCTGGGTAGAGTCCATCCTTTCAT
CCATCCATCCATCCTTAAAACATATATTTATTGAGTACCTATTGTGTACAGAGGTAACGT
AGTCTCTGTCCCCATAGAACTGATTGAATAGTGAAGACAAACCTTTAAAAAAACTTAAAC
TTACAAATCCTGTTCATCACAAGTGGTGTTTATTGCAATCATCTCCTGGTTTGCAACCTC
TTTTCTCAACAGAACATATGTTGCAAGACATTCCCATGGGGGCATTTGGATTTTGGCAAA
TAGCTGAAATGGCCCTCGGTTGTACACACTTCTTTGCATTCCAGCTGTCACTCTGCCCCT
TTCCACAACTAATTGCAACAGATTGTTGAGTCATAACACCAGTGGGAATTTCTGGAAAAA
TCAGGCACAGAAAAACCTCGGCTCAGAATACTTTGATGCCGCCTCACCTCTGTGTTTCCT
TGGCTTTTCATGGACGTGTTTTTAAATAAAGAACAATTCTTAGAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               387-1223, gnl|bosTau2|chr16 (45184477-45185344)
               

               
               387-1223, gnl|Hg17|chr1 (179944735-179945668)
               

               
               387-1223, gnl|Mm7|chr1 (153084690-153083855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               387-1223, gnl|bosTau2|chr16 (45184477-45185344)
               

               
               387-1223, gnl|Hg17|chr1 (179944735-179945668)
               

               
               387-1223, gnl|Mm7|chr1 (153084690-153083855)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)

	387-1223, gnl\|bosTau2\|chr16 (45184477-45185344)
	387-1223, gnl\|Hg17\|chr1 (179944735-179945668)
	387-1223, gnl\|Mm7\|chr1 (153084690-153083855)

	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	nlu (0.191681)
	sin (0.174948)
	duo (0.172801)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	ova (0.129132)