Non-Coding RNA Search

Ss1.1-rspl04_m5.5

Sequence:


               
               ATTTAAGGAGGTGATTAAAGTTCACCAAAGTACTGTAACTTCGTATCTGGAGGACATAAT
CCTGAACACCGAAGAGAATACTGCAGAAGAACAAGCCAGGGCAGAAATAGAGAAGATGGC
TGAGGAAATCAATGACATTGCTTATGAAATGGAAAGCCGTCGAACTCAGCTTCAGTCAGA
GGAGATTGTTGCTGAGTTGGTTTATAGTTTCCTGATCCCAGAGGTGCAAAAGGACTTTGT
CAAAGAAAAGGTGAGGAACGCACAGCGGAAGCACATCCTTGCAGCCCATGAGATCATCCA
CAGGCACACAGAAGCCATGCTTGAGAAGAATTTTTTTGCACAGCATCAGGAATCAGACTC
TAAGTTATTTGAAGGTGAAAGTGAAAATGAGCAGAACAGCTGAGACTATATGGATCATGA
TCTTCTTAAAAAGAAGCTGCACAAATCATCGTGCAGCATTCAGCCGTCTGTGCTTCTCCT
GAGATGTGCAGCTCTTCTGGGCTTGTCAGTGTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAAGGAGGTGATTAAAGTTCACCAAAGTACTGTAACTTCGTATCTGGAGGACATAAT
CCTGAACACCGAAGAGAATACTGCAGAAGAACAAGCCAGGGCAGAAATAGAGAAGATGGC
TGAGGAAATCAATGACATTGCTTATGAAATGGAAAGCCGTCGAACTCAGCTTCAGTCAGA
GGAGATTGTTGCTGAGTTGGTTTATAGTTTCCTGATCCCAGAGGTGCAAAAGGACTTTGT
CAAAGAAAAGGTGAGGAACGCACAGCGGAAGCACATCCTTGCAGCCCATGAGATCATCCA
CAGGCACACAGAAGCCATGCTTGAGAAGAATTTTTTTGCACAGCATCAGGAATCAGACTC
TAAGTTATTTGAAGGTGAAAGTGAAAATGAGCAGAACAGCTGAGACTATATGGATCATGA
TCTTCTTAAAAAGAAGCTGCACAAATCATCGTGCAGCATTCAGCCGTCTGTGCTTCTCCT
GAGATGTGCAGCTCTTCTGGGCTTGTCAGTGTGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14488277|dbj|BAB60902.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14488277|dbj|BAB60902.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-159, gnl|bosTau2|chr1 (29970265-29970415)
               

               
               9-159, gnl|Hg17|chr3 (120948650-120948800)
               

               
               9-159, gnl|Mm7|chr16 (38008916-38008766)
               


               
               251-404, gnl|bosTau2|chr1 (30030363-30030516)
               

               
               251-404, gnl|Hg17|chr3 (120952473-120952635)
               

               
               251-404, gnl|Mm7|chr16 (38004445-38004233)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-159, gnl|bosTau2|chr1 (29970265-29970415)
               

               
               9-159, gnl|Hg17|chr3 (120948650-120948800)
               

               
               9-159, gnl|Mm7|chr16 (38008916-38008766)
               


               
               251-404, gnl|bosTau2|chr1 (30030363-30030516)
               

               
               251-404, gnl|Hg17|chr3 (120952473-120952635)
               

               
               251-404, gnl|Mm7|chr16 (38004445-38004233)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               spl (0.143184)

	9-159, gnl\|bosTau2\|chr1 (29970265-29970415)
	9-159, gnl\|Hg17\|chr3 (120948650-120948800)
	9-159, gnl\|Mm7\|chr16 (38008916-38008766)

	251-404, gnl\|bosTau2\|chr1 (30030363-30030516)
	251-404, gnl\|Hg17\|chr3 (120952473-120952635)
	251-404, gnl\|Mm7\|chr16 (38004445-38004233)