Non-Coding RNA Search

Ss1.1-rspl11_a3.5

Sequence:


               
               TACTTGCACACGTGAGTGAAAGTACAAAGAGAACACCCACCATGTTAAAGAATTAGAGCA
GAAAAATGGAAGGACCTGTCTCTCAGAGGATATGGTTACTGGCAGTGATTCAGTGGCTCA
AGAACATCATCTGGGAGACAGGTTCCTCTGAGAATTTTGAGCAAACAAACCTTGATCGCT
TGTGGCTCTATTAGTCAAGGATCCTGTTACTTTCAGCTAAAAACGTTTCTAGTTGACACA
TTCCAATCCTATCCAGATCAGGCCGCAGATCCATTTTCCAGGTATGCCTCCCTCTCTTGA
TTTAGAATGTTTTCTTTTCCTCCCTGTGCCACTTCTGCATGTATCCTGAAATATTCAGTC
ACTTCCTCTTTGAAGGTTTTGCTGATCTTTCATCTGTCTTTCTGAAGCACATTGCTAACA
CCTCCCGTAAAGCATGTTCCAATTTTGCGTGGCCATGTACTCACCTGCTGCTTCTGTAGA
TTCTGGTATCCGCTGGAAGGGCAAAGGCCACAGCTCATTCCCCATCTCCTGCCTAAATTG
GGCCTTTACATATAAGGGAGTTGAGGGGAGGAGTTAGGGTGGGAGGTGGCGTTCTCACAA
CTGCCTGTTGAATATATGCTAAGACTGAGGAGTCTGCAGATTAAAAAGCCACCCTTAGCC
CTCCCTGTAAACATCTGGAAAGTATTATCCTTACAAATGATTTTGTAAATACTCCAGGAA
ATTGGCTTCTACTACCATTCCAGCAGCTAGTGGAGCCAGTTTGGCTTCAGGTCTTAGAGA
AATGATTTGTCATCTGTTTCATTTGTTCGCTTTTTCCTGACAGAGCTGGAATTCTGGATT
GTTCCCCACTTAAAAAGCTGCCGAAGCCAAACCAGAAGTAGACAGGGCAGGATGTGTGGC
CCTTCCTTCCCACTCATTTCACAGGGTAAAAATTCACAGGCAGTTTTCCTAGAATTACAT
TTTGTGACTGGATTTTCAATAGCATCATTATGATTTTTTTTTTCCCCTATAAGAGAGAGG
ATCTTATATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTGCACACGTGAGTGAAAGTACAAAGAGAACACCCACCATGTTAAAGAATTAGAGCA
GAAAAATGGAAGGACCTGTCTCTCAGAGGATATGGTTACTGGCAGTGATTCAGTGGCTCA
AGAACATCATCTGGGAGACAGGTTCCTCTGAGAATTTTGAGCAAACAAACCTTGATCGCT
TGTGGCTCTATTAGTCAAGGATCCTGTTACTTTCAGCTAAAAACGTTTCTAGTTGACACA
TTCCAATCCTATCCAGATCAGGCCGCAGATCCATTTTCCAGGTATGCCTCCCTCTCTTGA
TTTAGAATGTTTTCTTTTCCTCCCTGTGCCACTTCTGCATGTATCCTGAAATATTCAGTC
ACTTCCTCTTTGAAGGTTTTGCTGATCTTTCATCTGTCTTTCTGAAGCACATTGCTAACA
CCTCCCGTAAAGCATGTTCCAATTTTGCGTGGCCATGTACTCACCTGCTGCTTCTGTAGA
TTCTGGTATCCGCTGGAAGGGCAAAGGCCACAGCTCATTCCCCATCTCCTGCCTAAATTG
GGCCTTTACATATAAGGGAGTTGAGGGGAGGAGTTAGGGTGGGAGGTGGCGTTCTCACAA
CTGCCTGTTGAATATATGCTAAGACTGAGGAGTCTGCAGATTAAAAAGCCACCCTTAGCC
CTCCCTGTAAACATCTGGAAAGTATTATCCTTACAAATGATTTTGTAAATACTCCAGGAA
ATTGGCTTCTACTACCATTCCAGCAGCTAGTGGAGCCAGTTTGGCTTCAGGTCTTAGAGA
AATGATTTGTCATCTGTTTCATTTGTTCGCTTTTTCCTGACAGAGCTGGAATTCTGGATT
GTTCCCCACTTAAAAAGCTGCCGAAGCCAAACCAGAAGTAGACAGGGCAGGATGTGTGGC
CCTTCCTTCCCACTCATTTCACAGGGTAAAAATTCACAGGCAGTTTTCCTAGAATTACAT
TTTGTGACTGGATTTTCAATAGCATCATTATGATTTTTTTTTTCCCCTATAAGAGAGAGG
ATCTTATATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9280158|dbj|BAB01633.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9280158|dbj|BAB01633.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               651-847, - strand, RNAz p=0.95362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               651-847, - strand, RNAz p=0.95362

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1025, gnl|bosTau2|chr29 (3406264-3405280)
               

               
               3-1025, gnl|Hg17|chr11 (86716004-86719413)
               

               
               3-1025, gnl|Mm7|chr7 (85073748-85071724)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1025, gnl|bosTau2|chr29 (3406264-3405280)
               

               
               3-1025, gnl|Hg17|chr11 (86716004-86719413)
               

               
               3-1025, gnl|Mm7|chr7 (85073748-85071724)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               spl (0.143184)

	3-1025, gnl\|bosTau2\|chr29 (3406264-3405280)
	3-1025, gnl\|Hg17\|chr11 (86716004-86719413)
	3-1025, gnl\|Mm7\|chr7 (85073748-85071724)