Non-Coding RNA Search

Ss1.1-rspl11_d14.5

Sequence:


               
               CTTACATCTTCCTTTGCATCATCGGTCTCTTGGAAATTCTCTCTCTCAATGGATATTTTT
AACAAAAATAGCTAAGAAAACCTCAACGCATATTTACCTAGCACATCTTGTGACTGCAAA
CTTACTTGTGTGCAGCGCCATGCCTTTCATGGGTATCTATTTCCTGAAAGGTTTTCAATG
GGAGTATCAATCTGCACAATGCAGAGTAGTCAATTTTTTGGGAACTCTATCCATGCACGT
AAGTATGTTTGTCAGCCTCTTAATTTTAAGTTGGATTGCCATAAGTCGCTACGCTACCTT
AATGAAAAAGGATTCCACGCAAGAGACCACTTCATGCTACGAGAAGATATTTTATGGCCA
TTTACTGAAAAAATTTCGCCAGCCCAACTTTGCTAGAAAACTCTGTGTCTACATATGGGT
GGTTGTATTAGGCATAATCATTCCAGTTATCCTATACTACTCAGTTGTAGAGGCTACAGA
AGGAGAAGAGAAGGTGTGCTACAATCGGCAGATGGAACTAGGAGCCATGCTCTCTCAGAT
TGCAGGCCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTACATCTTCCTTTGCATCATCGGTCTCTTGGAAATTCTCTCTCTCAATGGATATTTTT
AACAAAAATAGCTAAGAAAACCTCAACGCATATTTACCTAGCACATCTTGTGACTGCAAA
CTTACTTGTGTGCAGCGCCATGCCTTTCATGGGTATCTATTTCCTGAAAGGTTTTCAATG
GGAGTATCAATCTGCACAATGCAGAGTAGTCAATTTTTTGGGAACTCTATCCATGCACGT
AAGTATGTTTGTCAGCCTCTTAATTTTAAGTTGGATTGCCATAAGTCGCTACGCTACCTT
AATGAAAAAGGATTCCACGCAAGAGACCACTTCATGCTACGAGAAGATATTTTATGGCCA
TTTACTGAAAAAATTTCGCCAGCCCAACTTTGCTAGAAAACTCTGTGTCTACATATGGGT
GGTTGTATTAGGCATAATCATTCCAGTTATCCTATACTACTCAGTTGTAGAGGCTACAGA
AGGAGAAGAGAAGGTGTGCTACAATCGGCAGATGGAACTAGGAGCCATGCTCTCTCAGAT
TGCAGGCCTCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q80UB1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80UB1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, + strand, RNAz p=0.846751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, + strand, RNAz p=0.846751

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-552, gnl|bosTau2|chrX (31560544-31561095)
               

               
               2-552, gnl|Hg17|chrX (41342596-41343147)
               

               
               2-552, gnl|Mm7|chrX (12098427-12098978)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-552, gnl|bosTau2|chrX (31560544-31561095)
               

               
               2-552, gnl|Hg17|chrX (41342596-41343147)
               

               
               2-552, gnl|Mm7|chrX (12098427-12098978)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.429553)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)

	2-552, gnl\|bosTau2\|chrX (31560544-31561095)
	2-552, gnl\|Hg17\|chrX (41342596-41343147)
	2-552, gnl\|Mm7\|chrX (12098427-12098978)