Non-Coding RNA Search

Ss1.1-rspl11_g15.5

Sequence:


               
               AGTTCCCATGAATAGTACAGAATCTGCTTTATCTAAGGGAAACCATTCTAGTCCTAGTAA
AAAGTAAGAGATCACCATAGTCAAGATAGAAAGTCTTCATGGGCTACCTACTATTCTTAA
AAGCATTATTTATCAGGCAGCTATAATATATTTTGTCACCACACACACTTTTCTTCTTTT
TTTTAAATAGGAGTTAAGCCGTTTGAGTGCTTAACATGTGGAGTAGCTTGGGCAGATGCC
CGATCTCTGAAACGCCACGTCAGGACACATACAGGTGAACGGCCCTATGTCTGTCCGGTA
TGTAGTGAAGCCTACATAGATGCGCGAACACTGCGTAAACATATGACTAAGTTCCACAGA
GATTATGTGCCTTGCAAAATTATGCTGGAAAAAGATACCCTTCAGTTTCATAACCAAGGA
ACTCAAGTGGAGCATGCTGTTAGCATCTTAACAGCAGATATGCAAGAACAAGAAAGCAGT
GCTTCTCAAGAACTTGAAACTGTGGTGGTGACAGGAGAAACTATGGAAGCTCTAGAGGCT
GTTGCAGCTACTGAAGAATGTCCATCAGTATCTACACTTTCTGACCAAAGTATTATGCAA
GTGGTTAATTATGTGCTGGCACAACAGCAAGGACAGAAGCTGTCTGAGGTCGCAGAAGCT
ATTCAGACTGTTGAAGTAGAAGTGGCACATATTTCAGAAACAGAATGAATGTCATAATGG
AGATTAAAAAGAAGTGATACATATATTGAACTCAGAGAACATTTGTTTACAGTACTATAT
GACTATCTGCCTAGAGTTTGTCCAGCCTCTGGGCTGTTTGGTGGTGTTTTAACATTTATT
TCTAAACGGTTTGTCTGGCTAATGGGTTTGGTAGAGAAAATCCGTTTACTGTAAAGAAAT
TGAAAACAAATCTGTTTGATGGCAGTGGTTTATCATGGTATACGTTTTATGAATTAATGT
TTATAAAGAACTGTACTAAATTACAAACTGTACAGTTTCATTTGCATTTTGCCATTACTA
TATACTTTGATTTTGAAAGGCTGCAGTAATTGGCTTTTCTTGTATTCTCAAAATACAGAG
GTTCTGTGATTTCATTTGCCCTGTCTATGGATTAAAAATTCTAATATAAAGCATTTTAGT
AGGATGCCTAGGTATATTACATTTTTTAAATGCTTCAAATCCGTGAGTCCTGACTTACTA
TTTATTTTAACCCCTTATAAAGTCAGGGATTCTTTATTATATTTTAAAGCACTTAATGAG
TTACATGTTGTAATCAAGTTTGCACAATATACTTAATCTATATGGGGAACCCTTAAATGA
ATAGCTGATTTTTTTAAAATGCCATTAAAATGCATGAAATGCACATTTAAAGCCTTACTA
TACTATCCTTCAAGGCAAGTAAATTGACCATGAGCAAAGAACACCGTTATTAAACTCTGT
TGATGGGAAATTTCTCCTTGATAACATGAAACAATAAATGGGGAGGGGTGAAAACTAGGT
TTGCTGTGTTTGAAGCTTTTGTATCATGTTTAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCCCATGAATAGTACAGAATCTGCTTTATCTAAGGGAAACCATTCTAGTCCTAGTAA
AAAGTAAGAGATCACCATAGTCAAGATAGAAAGTCTTCATGGGCTACCTACTATTCTTAA
AAGCATTATTTATCAGGCAGCTATAATATATTTTGTCACCACACACACTTTTCTTCTTTT
TTTTAAATAGGAGTTAAGCCGTTTGAGTGCTTAACATGTGGAGTAGCTTGGGCAGATGCC
CGATCTCTGAAACGCCACGTCAGGACACATACAGGTGAACGGCCCTATGTCTGTCCGGTA
TGTAGTGAAGCCTACATAGATGCGCGAACACTGCGTAAACATATGACTAAGTTCCACAGA
GATTATGTGCCTTGCAAAATTATGCTGGAAAAAGATACCCTTCAGTTTCATAACCAAGGA
ACTCAAGTGGAGCATGCTGTTAGCATCTTAACAGCAGATATGCAAGAACAAGAAAGCAGT
GCTTCTCAAGAACTTGAAACTGTGGTGGTGACAGGAGAAACTATGGAAGCTCTAGAGGCT
GTTGCAGCTACTGAAGAATGTCCATCAGTATCTACACTTTCTGACCAAAGTATTATGCAA
GTGGTTAATTATGTGCTGGCACAACAGCAAGGACAGAAGCTGTCTGAGGTCGCAGAAGCT
ATTCAGACTGTTGAAGTAGAAGTGGCACATATTTCAGAAACAGAATGAATGTCATAATGG
AGATTAAAAAGAAGTGATACATATATTGAACTCAGAGAACATTTGTTTACAGTACTATAT
GACTATCTGCCTAGAGTTTGTCCAGCCTCTGGGCTGTTTGGTGGTGTTTTAACATTTATT
TCTAAACGGTTTGTCTGGCTAATGGGTTTGGTAGAGAAAATCCGTTTACTGTAAAGAAAT
TGAAAACAAATCTGTTTGATGGCAGTGGTTTATCATGGTATACGTTTTATGAATTAATGT
TTATAAAGAACTGTACTAAATTACAAACTGTACAGTTTCATTTGCATTTTGCCATTACTA
TATACTTTGATTTTGAAAGGCTGCAGTAATTGGCTTTTCTTGTATTCTCAAAATACAGAG
GTTCTGTGATTTCATTTGCCCTGTCTATGGATTAAAAATTCTAATATAAAGCATTTTAGT
AGGATGCCTAGGTATATTACATTTTTTAAATGCTTCAAATCCGTGAGTCCTGACTTACTA
TTTATTTTAACCCCTTATAAAGTCAGGGATTCTTTATTATATTTTAAAGCACTTAATGAG
TTACATGTTGTAATCAAGTTTGCACAATATACTTAATCTATATGGGGAACCCTTAAATGA
ATAGCTGATTTTTTTAAAATGCCATTAAAATGCATGAAATGCACATTTAAAGCCTTACTA
TACTATCCTTCAAGGCAAGTAAATTGACCATGAGCAAAGAACACCGTTATTAAACTCTGT
TGATGGGAAATTTCTCCTTGATAACATGAAACAATAAATGGGGAGGGGTGAAAACTAGGT
TTGCTGTGTTTGAAGCTTTTGTATCATGTTTAATTG

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               169-287, - strand, RNAz p=0.635931
               

               
               368-727, - strand, RNAz p=0.766755
               

               
               763-878, + strand, RNAz p=0.934311
               

               
               1146-1264, - strand, RNAz p=0.804074

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-287, - strand, RNAz p=0.635931
               

               
               368-727, - strand, RNAz p=0.766755
               

               
               763-878, + strand, RNAz p=0.934311
               

               
               1146-1264, - strand, RNAz p=0.804074

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1234-1314, + strand, RNAmicro p=0.976929

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1234-1314, + strand, RNAmicro p=0.976929

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014415, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014415, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               18-155, gnl|bosTau2|chr11 (21741172-21741298)
               

               
               18-155, gnl|Hg17|chr3 (102853384-102853262)
               

               
               18-155, gnl|Mm7|chr16 (55861691-55861819)
               


               
               169-1536, gnl|bosTau2|chr11 (21741354-21742725)
               

               
               169-1536, gnl|Hg17|chr3 (102853231-102851787)
               

               
               169-1536, gnl|Mm7|chr16 (55861852-55863175)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-155, gnl|bosTau2|chr11 (21741172-21741298)
               

               
               18-155, gnl|Hg17|chr3 (102853384-102853262)
               

               
               18-155, gnl|Mm7|chr16 (55861691-55861819)
               


               
               169-1536, gnl|bosTau2|chr11 (21741354-21742725)
               

               
               169-1536, gnl|Hg17|chr3 (102853231-102851787)
               

               
               169-1536, gnl|Mm7|chr16 (55861852-55863175)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.286369)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)

	169-287, - strand, RNAz p=0.635931
	368-727, - strand, RNAz p=0.766755
	763-878, + strand, RNAz p=0.934311
	1146-1264, - strand, RNAz p=0.804074

	18-155, gnl\|bosTau2\|chr11 (21741172-21741298)
	18-155, gnl\|Hg17\|chr3 (102853384-102853262)
	18-155, gnl\|Mm7\|chr16 (55861691-55861819)

	169-1536, gnl\|bosTau2\|chr11 (21741354-21742725)
	169-1536, gnl\|Hg17\|chr3 (102853231-102851787)
	169-1536, gnl\|Mm7\|chr16 (55861852-55863175)