Non-Coding RNA Search

Ss1.1-rspl11_g4.5

Sequence:


               
               TTAAAAAATATTAATCAAGCCTGATAATTAAAGTAACAAGTGTGATATTCTTTTCTATTC
TATGAAGTTATGGAGCCCTTGGGAAGACTCTATCTGTAAGATAGAAAAAAGAAGAGCTCG
TAAAAATTTTACAGAAGAAGAAGTAAATTACCTTTTCAGTGGAGTTAAGAAAATGGGAAA
TCACTGGAATTTAATTTTGTGGTCTTTCCCCTTTCAGCAAGGACGGAAAGCTGTGGACCT
TGCTCACAAATACCACAAGCTGACCAAATGCCCCAAGTATGCTGCTCCTTGATTGGAAGA
AGACTTGTCTGTTTTTAGTTTGAATACTGTATATACTTAAAACACAATGTGTCGAAAATA
TAAAATGTAAAATATTCTTCTAAGATCTCATGAGACATGAAATTTGGCAATGGGGATACT
GTTTTAATTACTTTTTGTGATGCTGTAGCTCATCAAACAATTAAAACATACATTTTCAGT
GTGTAGATTAGTAGGACACAATTCCTTTATGAGATCAAATTTTTATTTAGAAATATGATT
TTACTTTACTAAGCTCAAAGAATATAAGTCAGAGAAAAAAATAATCAGCCTTTAGGCATT
TTTTGACATCACATTGCAATGAATTCTATGTGAAACACTTGTATTTTCGTATTCCTACCC
AGTGGAAAGTCTCTCCCTGGAACTTAGATAGATAGACTCCCAAGATGTTCAAGTGAGGTT
CCCACACACTAAATCAGTGTTTGACAGTTTGTTAATTAAAATGTTTCTTCTTGTAAAAGC
TAATTATGCAGTTACTTTGAATACTCCCAAATTATACGGTCAGGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAAATATTAATCAAGCCTGATAATTAAAGTAACAAGTGTGATATTCTTTTCTATTC
TATGAAGTTATGGAGCCCTTGGGAAGACTCTATCTGTAAGATAGAAAAAAGAAGAGCTCG
TAAAAATTTTACAGAAGAAGAAGTAAATTACCTTTTCAGTGGAGTTAAGAAAATGGGAAA
TCACTGGAATTTAATTTTGTGGTCTTTCCCCTTTCAGCAAGGACGGAAAGCTGTGGACCT
TGCTCACAAATACCACAAGCTGACCAAATGCCCCAAGTATGCTGCTCCTTGATTGGAAGA
AGACTTGTCTGTTTTTAGTTTGAATACTGTATATACTTAAAACACAATGTGTCGAAAATA
TAAAATGTAAAATATTCTTCTAAGATCTCATGAGACATGAAATTTGGCAATGGGGATACT
GTTTTAATTACTTTTTGTGATGCTGTAGCTCATCAAACAATTAAAACATACATTTTCAGT
GTGTAGATTAGTAGGACACAATTCCTTTATGAGATCAAATTTTTATTTAGAAATATGATT
TTACTTTACTAAGCTCAAAGAATATAAGTCAGAGAAAAAAATAATCAGCCTTTAGGCATT
TTTTGACATCACATTGCAATGAATTCTATGTGAAACACTTGTATTTTCGTATTCCTACCC
AGTGGAAAGTCTCTCCCTGGAACTTAGATAGATAGACTCCCAAGATGTTCAAGTGAGGTT
CCCACACACTAAATCAGTGTTTGACAGTTTGTTAATTAAAATGTTTCTTCTTGTAAAAGC
TAATTATGCAGTTACTTTGAATACTCCCAAATTATACGGTCAGGTTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               103-466, gnl|bosTau2|chr18 (26722990-26722636)
               

               
               103-466, gnl|Hg17|chr16 (65346569-65346219)
               

               
               103-466, gnl|Mm7|chr8 (103046635-103046284)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-466, gnl|bosTau2|chr18 (26722990-26722636)
               

               
               103-466, gnl|Hg17|chr16 (65346569-65346219)
               

               
               103-466, gnl|Mm7|chr8 (103046635-103046284)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               spl (0.143184)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               spl (0.143184)
               

               
               tra (0.123092)

	103-466, gnl\|bosTau2\|chr18 (26722990-26722636)
	103-466, gnl\|Hg17\|chr16 (65346569-65346219)
	103-466, gnl\|Mm7\|chr8 (103046635-103046284)