Ss1.1-rspl12_b19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCCGCGGCCGCCGCCATGTCCCACCAGACCGGCATCCAAGCAAGTGAAGATGTTAA AGATATCTTTGCCAGAGCAAGAAATGGAAAATACAGGCTTCTGAAAATATCTATTGAAAA TGAGAAACTTGTGATTGGATCATGTAGGCAGCCTTCAGATTCCTGGGATAAGGATTATGA TTCCTTTGTTTTACCCATGTTGGAGGACAAACAACCGTGCTATATATTATTCAGGTTGGA TTCTCAGAATGCCCAGGGATATGAATGGATATTCATTGCATGGTCTCCAGACCATTCCCA TGTTCGTCAGAAAATGTTGTATGCAGCAACAAGGGCAACTCTGAAAAAGGAGTTTGGAGG TGGCCACATTAAAGATGAAGTATTTGGAACAGTAAAGGAAGATGTATCACTCCATGGATA TAAAAAGTATTTGCTGTCGCAGTCTTCTCCTGCCCCACTGACTGCAGCTGAGGAAGAATT ACGACAGATTAAAATTAATGAGGTACAAACTGACGTGAGTGTGGACACTAAGCATCAAAC ACTACAAGGAGTAGCATTCCCTATTTCTCGAGAAGCTTTTCAGGCTTTGGAAAAATTGAA TAATAGACAGCTCAACTATGTGCAGTTGGAAATAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCCGCGGCCGCCGCCATGTCCCACCAGACCGGCATCCAAGCAAGTGAAGATGTTAA AGATATCTTTGCCAGAGCAAGAAATGGAAAATACAGGCTTCTGAAAATATCTATTGAAAA TGAGAAACTTGTGATTGGATCATGTAGGCAGCCTTCAGATTCCTGGGATAAGGATTATGA TTCCTTTGTTTTACCCATGTTGGAGGACAAACAACCGTGCTATATATTATTCAGGTTGGA TTCTCAGAATGCCCAGGGATATGAATGGATATTCATTGCATGGTCTCCAGACCATTCCCA TGTTCGTCAGAAAATGTTGTATGCAGCAACAAGGGCAACTCTGAAAAAGGAGTTTGGAGG TGGCCACATTAAAGATGAAGTATTTGGAACAGTAAAGGAAGATGTATCACTCCATGGATA TAAAAAGTATTTGCTGTCGCAGTCTTCTCCTGCCCCACTGACTGCAGCTGAGGAAGAATT ACGACAGATTAAAATTAATGAGGTACAAACTGACGTGAGTGTGGACACTAAGCATCAAAC ACTACAAGGAGTAGCATTCCCTATTTCTCGAGAAGCTTTTCAGGCTTTGGAAAAATTGAA TAATAGACAGCTCAACTATGTGCAGTTGGAAATAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 122-303, gnl|bosTau2|chr5 (23494430-23494249) | |
| 122-303, gnl|canFam2|chr27 (13298739-13298600) | |
| 122-303, gnl|canFam2|chr27 (13298744-13298542) | |
| 122-303, gnl|canFam2|chr27 (13298739-13298600) | |
| 122-303, gnl|danRer3|chr4 (15324142-15324012) | |
| 122-303, gnl|danRer3|chr4 (15324156-15323962) | |
| 122-303, gnl|danRer3|chr4 (15324142-15324012) | |
| 122-303, gnl|dasNov1|scaffold_7024 (10465-10669) | |
| 122-303, gnl|dasNov1|scaffold_79426 (3932-4065) | |
| 122-303, gnl|dasNov1|scaffold_79426 (3932-4065) | |
| 122-303, gnl|echTel1|scaffold_312607 (7754-7615) | |
| 122-303, gnl|echTel1|scaffold_312607 (7759-7555) | |
| 122-303, gnl|echTel1|scaffold_312607 (7754-7615) | |
| 122-303, gnl|fr1|chrUn (65484194-65484333) | |
| 122-303, gnl|fr1|chrUn (65484189-65484380) | |
| 122-303, gnl|fr1|chrUn (65484194-65484333) | |
| 122-303, gnl|galGal2|chr1 (27012401-27012540) | |
| 122-303, gnl|galGal2|chr1 (27012396-27012598) | |
| 122-303, gnl|galGal2|chr1 (27012401-27012540) | |
| 122-303, gnl|hg17|chr12 (42482350-42482554) | |
| 122-303, gnl|Hg17|chr12 (42482535-42482354) | |
| 122-303, gnl|hg17|chr17 (24555336-24555475) | |
| 122-303, gnl|hg17|chrX (154084089-154084228) | |
| 122-303, gnl|loxAfr1|scaffold_594 (55608-55747) | |
| 122-303, gnl|loxAfr1|scaffold_594 (55603-55807) | |
| 122-303, gnl|loxAfr1|scaffold_594 (55608-55747) | |
| 122-303, gnl|mm7|chr15 (94590197-94590399) | |
| 122-303, gnl|Mm7|chr15 (94590382-94590201) | |
| 122-303, gnl|mm7|chr7 (100877877-100877738) | |
| 122-303, gnl|mm7|chr7 (100877877-100877738) | |
| 122-303, gnl|monDom2|scaffold_1392 (10034-9895) | |
| 122-303, gnl|monDom2|scaffold_1392 (10034-9895) | |
| 122-303, gnl|monDom2|scaffold_31 (30933079-30932880) | |
| 122-303, gnl|oryCun1|scaffold_213086 (74618-74757) | |
| 122-303, gnl|oryCun1|scaffold_213086 (74613-74816) | |
| 122-303, gnl|oryCun1|scaffold_213086 (74618-74757) | |
| 122-303, gnl|panTro1|chr10 (43079657-43079861) | |
| 122-303, gnl|panTro1|chrX (159391842-159391981) | |
| 122-303, gnl|panTro1|chrX (159391842-159391981) | |
| 122-303, gnl|rheMac2|chr11 (40770050-40770189) | |
| 122-303, gnl|rheMac2|chr11 (40770045-40770249) | |
| 122-303, gnl|rheMac2|chrX (153306117-153306256) | |
| 122-303, gnl|rn3|chr5 (142106428-142106285) | |
| 122-303, gnl|rn3|chr5 (142106428-142106285) | |
| 122-303, gnl|rn3|chr7 (133174191-133174393) | |
| 122-303, gnl|tetNig1|chr13 (9376245-9376106) | |
| 122-303, gnl|tetNig1|chr13 (9376248-9376057) | |
| 122-303, gnl|tetNig1|chr13 (9376245-9376106) | |
| 122-303, gnl|xenTro1|scaffold_66 (1733002-1733141) | |
| 122-303, gnl|xenTro1|scaffold_66 (1732997-1733192) | |
| 122-303, gnl|xenTro1|scaffold_66 (1733002-1733141) | |
| 498-636, gnl|bosTau2|chr5 (23489422-23489284) | |
| 498-636, gnl|Hg17|chr12 (42477909-42477770) | |
| 498-636, gnl|Mm7|chr15 (94586726-94586587) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-303, gnl|bosTau2|chr5 (23494430-23494249) | |
| 122-303, gnl|canFam2|chr27 (13298739-13298600) | |
| 122-303, gnl|canFam2|chr27 (13298744-13298542) | |
| 122-303, gnl|canFam2|chr27 (13298739-13298600) | |
| 122-303, gnl|danRer3|chr4 (15324142-15324012) | |
| 122-303, gnl|danRer3|chr4 (15324156-15323962) | |
| 122-303, gnl|danRer3|chr4 (15324142-15324012) | |
| 122-303, gnl|dasNov1|scaffold_7024 (10465-10669) | |
| 122-303, gnl|dasNov1|scaffold_79426 (3932-4065) | |
| 122-303, gnl|dasNov1|scaffold_79426 (3932-4065) | |
| 122-303, gnl|echTel1|scaffold_312607 (7754-7615) | |
| 122-303, gnl|echTel1|scaffold_312607 (7759-7555) | |
| 122-303, gnl|echTel1|scaffold_312607 (7754-7615) | |
| 122-303, gnl|fr1|chrUn (65484194-65484333) | |
| 122-303, gnl|fr1|chrUn (65484189-65484380) | |
| 122-303, gnl|fr1|chrUn (65484194-65484333) | |
| 122-303, gnl|galGal2|chr1 (27012401-27012540) | |
| 122-303, gnl|galGal2|chr1 (27012396-27012598) | |
| 122-303, gnl|galGal2|chr1 (27012401-27012540) | |
| 122-303, gnl|hg17|chr12 (42482350-42482554) | |
| 122-303, gnl|Hg17|chr12 (42482535-42482354) | |
| 122-303, gnl|hg17|chr17 (24555336-24555475) | |
| 122-303, gnl|hg17|chrX (154084089-154084228) | |
| 122-303, gnl|loxAfr1|scaffold_594 (55608-55747) | |
| 122-303, gnl|loxAfr1|scaffold_594 (55603-55807) | |
| 122-303, gnl|loxAfr1|scaffold_594 (55608-55747) | |
| 122-303, gnl|mm7|chr15 (94590197-94590399) | |
| 122-303, gnl|Mm7|chr15 (94590382-94590201) | |
| 122-303, gnl|mm7|chr7 (100877877-100877738) | |
| 122-303, gnl|mm7|chr7 (100877877-100877738) | |
| 122-303, gnl|monDom2|scaffold_1392 (10034-9895) | |
| 122-303, gnl|monDom2|scaffold_1392 (10034-9895) | |
| 122-303, gnl|monDom2|scaffold_31 (30933079-30932880) | |
| 122-303, gnl|oryCun1|scaffold_213086 (74618-74757) | |
| 122-303, gnl|oryCun1|scaffold_213086 (74613-74816) | |
| 122-303, gnl|oryCun1|scaffold_213086 (74618-74757) | |
| 122-303, gnl|panTro1|chr10 (43079657-43079861) | |
| 122-303, gnl|panTro1|chrX (159391842-159391981) | |
| 122-303, gnl|panTro1|chrX (159391842-159391981) | |
| 122-303, gnl|rheMac2|chr11 (40770050-40770189) | |
| 122-303, gnl|rheMac2|chr11 (40770045-40770249) | |
| 122-303, gnl|rheMac2|chrX (153306117-153306256) | |
| 122-303, gnl|rn3|chr5 (142106428-142106285) | |
| 122-303, gnl|rn3|chr5 (142106428-142106285) | |
| 122-303, gnl|rn3|chr7 (133174191-133174393) | |
| 122-303, gnl|tetNig1|chr13 (9376245-9376106) | |
| 122-303, gnl|tetNig1|chr13 (9376248-9376057) | |
| 122-303, gnl|tetNig1|chr13 (9376245-9376106) | |
| 122-303, gnl|xenTro1|scaffold_66 (1733002-1733141) | |
| 122-303, gnl|xenTro1|scaffold_66 (1732997-1733192) | |
| 122-303, gnl|xenTro1|scaffold_66 (1733002-1733141) | |
| 498-636, gnl|bosTau2|chr5 (23489422-23489284) | |
| 498-636, gnl|Hg17|chr12 (42477909-42477770) | |
| 498-636, gnl|Mm7|chr15 (94586726-94586587) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cki (0.330469) | |
| cje (0.165235) | |
| spl (0.143184) | |
| cst (0.140036) | |
| kid (0.129735) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.330469) | |
| cje (0.165235) | |
| spl (0.143184) | |
| cst (0.140036) | |
| kid (0.129735) |