Non-Coding RNA Search

Ss1.1-rspl12_c22.5.5

Sequence:


               
               ACCCACTGACTTTGAGCCCTATTCCTGTCCTAAAGGCTGCTCTCGAACTTGTGGTCAGTG
TAAAGGAAGCCCAGAGACTAATCAGATGAGACAGAGTTGGGCTTCCTCTAGCTCTCTGTC
TGACACATACGAGCCAAATTATGGGACAGTTAAACGGAGAGTATTGGAAAACACTCCAGC
TGAGTCGTCTGAGGGCTTGGACCACAAGGATGCCATTGACCCAGTTTATAAAACTGTTAC
TTCAAGTACAGAAAAGGGCTTGATTGTGTACTGTGTCACCTCACCCAAGAAGGAGGATAG
GTATAGGGAGCCTCCTCCGACTCCTCCGGGATACATGGGGATTTCTTTAGCGGACCTAAA
GGAAGGACCCCACCTACACCTAAAACCTCCAGATTATAGCGTGGCAGTGCAGAGGTCAAA
GATGATGCATCACAGCCTCTCTAGACTGCCACCAGCTTCTCTCAGTAGCATCCCGGTGGC
CTGTGTTCCATCGAAGATTGTAACTCAGCCTCAAAGGCATAATATGCAGCCGTCTCATCC
TAAACTAGCAGATGTGACTGACGCAGATAGCGAAGCAGATGAAAATGAACAGGTGTCAGC
AGTCTAGCCTTTGAGTGACCCACTTGAAGTCTACTGAAAGTCACAGAGGAAGAAGTGGGC
AGGAACCATCTCGTGATTCCGCAGCCCGCCAACAAACAAACAGCTCTGTTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTAACCCAGAGGTTTCGTTCCCTGCGC
TCTGGGCAGTGAGATAGCCCTGAGTCATGCTTCCTTTCATTTAATCCCTGCAGATGCATA
GTTTGCTCAGCTGTGGATTTCGTGCCTGGATACCAGTCTTTGGTTTGTACACCAGACCTG
CCTTGGGACCACAGTTACTGGAACAAATTCAAACTCGAGTCCTCACCATATATATCACTA
TAGATTTTCCTTTAACACATTATTTTTAAGATAATAGTAGTAGTGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCACTGACTTTGAGCCCTATTCCTGTCCTAAAGGCTGCTCTCGAACTTGTGGTCAGTG
TAAAGGAAGCCCAGAGACTAATCAGATGAGACAGAGTTGGGCTTCCTCTAGCTCTCTGTC
TGACACATACGAGCCAAATTATGGGACAGTTAAACGGAGAGTATTGGAAAACACTCCAGC
TGAGTCGTCTGAGGGCTTGGACCACAAGGATGCCATTGACCCAGTTTATAAAACTGTTAC
TTCAAGTACAGAAAAGGGCTTGATTGTGTACTGTGTCACCTCACCCAAGAAGGAGGATAG
GTATAGGGAGCCTCCTCCGACTCCTCCGGGATACATGGGGATTTCTTTAGCGGACCTAAA
GGAAGGACCCCACCTACACCTAAAACCTCCAGATTATAGCGTGGCAGTGCAGAGGTCAAA
GATGATGCATCACAGCCTCTCTAGACTGCCACCAGCTTCTCTCAGTAGCATCCCGGTGGC
CTGTGTTCCATCGAAGATTGTAACTCAGCCTCAAAGGCATAATATGCAGCCGTCTCATCC
TAAACTAGCAGATGTGACTGACGCAGATAGCGAAGCAGATGAAAATGAACAGGTGTCAGC
AGTCTAGCCTTTGAGTGACCCACTTGAAGTCTACTGAAAGTCACAGAGGAAGAAGTGGGC
AGGAACCATCTCGTGATTCCGCAGCCCGCCAACAAACAAACAGCTCTGTTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTAACCCAGAGGTTTCGTTCCCTGCGC
TCTGGGCAGTGAGATAGCCCTGAGTCATGCTTCCTTTCATTTAATCCCTGCAGATGCATA
GTTTGCTCAGCTGTGGATTTCGTGCCTGGATACCAGTCTTTGGTTTGTACACCAGACCTG
CCTTGGGACCACAGTTACTGGAACAAATTCAAACTCGAGTCCTCACCATATATATCACTA
TAGATTTTCCTTTAACACATTATTTTTAAGATAATAGTAGTAGTGGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56800218|emb|CAI35287.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56800218|emb|CAI35287.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               266-384, - strand, RNAz p=0.640547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-384, - strand, RNAz p=0.640547

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               266-522, gnl|bosTau2|chr7 (18678364-18678108)
               

               
               266-522, gnl|Hg17|chr5 (130792809-130792553)
               

               
               266-522, gnl|Mm7|chr11 (54651026-54651282)
               


               
               581-722, gnl|bosTau2|chr7 (18677395-18677256)
               

               
               581-722, gnl|Hg17|chr5 (130790884-130790752)
               

               
               581-722, gnl|Mm7|chr11 (54652836-54652957)
               


               
               741-1008, gnl|bosTau2|chr7 (18677270-18677006)
               

               
               741-1008, gnl|canFam2|chr11 (22783873-22784286)
               

               
               741-1008, gnl|dasNov1|scaffold_15943 (44488-44914)
               

               
               741-1008, gnl|echTel1|scaffold_183626 (3479-3888)
               

               
               741-1008, gnl|hg17|chr5 (130790343-130790756)
               

               
               741-1008, gnl|Hg17|chr5 (130790763-130790502)
               

               
               741-1008, gnl|mm7|chr11 (54653350-54652955)
               

               
               741-1008, gnl|Mm7|chr11 (54652946-54653190)
               

               
               741-1008, gnl|monDom2|scaffold_6 (95285943-95285430)
               

               
               741-1008, gnl|oryCun1|scaffold_174942 (4752-4353)
               

               
               741-1008, gnl|panTro1|chr4 (137127859-137128272)
               

               
               741-1008, gnl|rheMac2|chr6 (127843841-127844254)
               

               
               741-1008, gnl|rn3|chr10 (40114722-40114325)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               266-522, gnl|bosTau2|chr7 (18678364-18678108)
               

               
               266-522, gnl|Hg17|chr5 (130792809-130792553)
               

               
               266-522, gnl|Mm7|chr11 (54651026-54651282)
               


               
               581-722, gnl|bosTau2|chr7 (18677395-18677256)
               

               
               581-722, gnl|Hg17|chr5 (130790884-130790752)
               

               
               581-722, gnl|Mm7|chr11 (54652836-54652957)
               


               
               741-1008, gnl|bosTau2|chr7 (18677270-18677006)
               

               
               741-1008, gnl|canFam2|chr11 (22783873-22784286)
               

               
               741-1008, gnl|dasNov1|scaffold_15943 (44488-44914)
               

               
               741-1008, gnl|echTel1|scaffold_183626 (3479-3888)
               

               
               741-1008, gnl|hg17|chr5 (130790343-130790756)
               

               
               741-1008, gnl|Hg17|chr5 (130790763-130790502)
               

               
               741-1008, gnl|mm7|chr11 (54653350-54652955)
               

               
               741-1008, gnl|Mm7|chr11 (54652946-54653190)
               

               
               741-1008, gnl|monDom2|scaffold_6 (95285943-95285430)
               

               
               741-1008, gnl|oryCun1|scaffold_174942 (4752-4353)
               

               
               741-1008, gnl|panTro1|chr4 (137127859-137128272)
               

               
               741-1008, gnl|rheMac2|chr6 (127843841-127844254)
               

               
               741-1008, gnl|rn3|chr10 (40114722-40114325)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	266-522, gnl\|bosTau2\|chr7 (18678364-18678108)
	266-522, gnl\|Hg17\|chr5 (130792809-130792553)
	266-522, gnl\|Mm7\|chr11 (54651026-54651282)

	581-722, gnl\|bosTau2\|chr7 (18677395-18677256)
	581-722, gnl\|Hg17\|chr5 (130790884-130790752)
	581-722, gnl\|Mm7\|chr11 (54652836-54652957)

	741-1008, gnl\|bosTau2\|chr7 (18677270-18677006)
	741-1008, gnl\|canFam2\|chr11 (22783873-22784286)
	741-1008, gnl\|dasNov1\|scaffold_15943 (44488-44914)
	741-1008, gnl\|echTel1\|scaffold_183626 (3479-3888)
	741-1008, gnl\|hg17\|chr5 (130790343-130790756)
	741-1008, gnl\|Hg17\|chr5 (130790763-130790502)
	741-1008, gnl\|mm7\|chr11 (54653350-54652955)
	741-1008, gnl\|Mm7\|chr11 (54652946-54653190)
	741-1008, gnl\|monDom2\|scaffold_6 (95285943-95285430)
	741-1008, gnl\|oryCun1\|scaffold_174942 (4752-4353)
	741-1008, gnl\|panTro1\|chr4 (137127859-137128272)
	741-1008, gnl\|rheMac2\|chr6 (127843841-127844254)
	741-1008, gnl\|rn3\|chr10 (40114722-40114325)