Ss1.1-rspl12_k12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGACAGCTGTTTGAATGTTATCTGTTGCCACCTATTGATGTCAAGATGACTAAGCTGGG ATTTTTACGGTTGTCCTATGAGAAGCAGGACACACTTCTGAAGCTTCTAATTCTGTCAAT GGCTGCTGTATTATCATTCTCCACTCGTCTCTTTGCTGTCCTGAGATTTGAAAGTGTCAT CCATGAATTTGATCCGTACTTTAATTATCGGACTACCCGGTTCTTGGCTGAGGAGGGATT TTATAAATTCCATAACTGGTTTGATGACCGGGCCTGGTACCCATTGGGACGAATTATTGG AGGAACAATTTACCCAGGCTTAATGATCACCTCTGCTGCAATCTACCATGTCCTCCATTT TTTCCACATCACCATCGACATTCGGAATGTCTGTGTGTTCCTGGCCCCTCTCTTCTCTTC CTTCACTACCATCGTCACGTACCACCTTACCAAAGAGCTCAAGGATGCAGGAGCTGGTCT TCTTGCTGCTGCCATGATTGCTGTAGTTCCTGGATATATCTCTCGATCTGTGGCTGGCTC CTATGATAATGAAGGGATTGCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA AGCAGTAAAGACTGGTTCCATCTATTGGGCAGCCAAGTGTGCCCTTGCTTATTTCTACAT GGTCTCTTCATGGGGAGGTTATGTGTTCTTGATCAACTTGATCCCTCTTCATGTGCTGGT GCTGATGCTCACAGGACGTTTCTCTCACCGGATCTATGTGGCCTACTGTACTGTTTACTG CCTGGGCACAATTCTTTCCATGCAGATCTCCTTTGTGGGTTTCCAGCCTGTGCTTTCATC AGAACACATGGCAGCCTTTGGAGTCTTTGGTCTATGCCAGATCCATGCCTTTGTGGATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGACAGCTGTTTGAATGTTATCTGTTGCCACCTATTGATGTCAAGATGACTAAGCTGGG ATTTTTACGGTTGTCCTATGAGAAGCAGGACACACTTCTGAAGCTTCTAATTCTGTCAAT GGCTGCTGTATTATCATTCTCCACTCGTCTCTTTGCTGTCCTGAGATTTGAAAGTGTCAT CCATGAATTTGATCCGTACTTTAATTATCGGACTACCCGGTTCTTGGCTGAGGAGGGATT TTATAAATTCCATAACTGGTTTGATGACCGGGCCTGGTACCCATTGGGACGAATTATTGG AGGAACAATTTACCCAGGCTTAATGATCACCTCTGCTGCAATCTACCATGTCCTCCATTT TTTCCACATCACCATCGACATTCGGAATGTCTGTGTGTTCCTGGCCCCTCTCTTCTCTTC CTTCACTACCATCGTCACGTACCACCTTACCAAAGAGCTCAAGGATGCAGGAGCTGGTCT TCTTGCTGCTGCCATGATTGCTGTAGTTCCTGGATATATCTCTCGATCTGTGGCTGGCTC CTATGATAATGAAGGGATTGCCATCTTTTGCATGCTACTCACCTACTACATGTGGATCAA AGCAGTAAAGACTGGTTCCATCTATTGGGCAGCCAAGTGTGCCCTTGCTTATTTCTACAT GGTCTCTTCATGGGGAGGTTATGTGTTCTTGATCAACTTGATCCCTCTTCATGTGCTGGT GCTGATGCTCACAGGACGTTTCTCTCACCGGATCTATGTGGCCTACTGTACTGTTTACTG CCTGGGCACAATTCTTTCCATGCAGATCTCCTTTGTGGGTTTCCAGCCTGTGCTTTCATC AGAACACATGGCAGCCTTTGGAGTCTTTGGTCTATGCCAGATCCATGCCTTTGTGGATTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 6-134, gnl|bosTau2|chr29 (22482369-22482241) | |
| 6-134, gnl|Hg17|chr11 (124970984-124971108) | |
| 6-134, gnl|Mm7|chr9 (36691590-36691462) | |
| 309-595, gnl|bosTau2|chr22 (4240492-4240778) | |
| 309-595, gnl|canFam2|chr23 (16133751-16133448) | |
| 309-595, gnl|danRer3|chr16 (41494036-41494339) | |
| 309-595, gnl|dasNov1|scaffold_33871 (15361-15058) | |
| 309-595, gnl|echTel1|scaffold_230240 (652-952) | |
| 309-595, gnl|fr1|chrUn (166945313-166945008) | |
| 309-595, gnl|galGal2|chr2 (39269886-39270190) | |
| 309-595, gnl|hg17|chr3 (31596302-31596605) | |
| 309-595, gnl|Hg17|chr3 (31596306-31596592) | |
| 309-595, gnl|loxAfr1|scaffold_2138 (115890-115587) | |
| 309-595, gnl|mm7|chr9 (114941727-114941424) | |
| 309-595, gnl|Mm7|chr9 (114941721-114941435) | |
| 309-595, gnl|monDom2|scaffold_7 (87494602-87494898) | |
| 309-595, gnl|oryCun1|scaffold_161611 (5974-6277) | |
| 309-595, gnl|panTro1|chr2 (32574018-32574321) | |
| 309-595, gnl|rheMac2|chr2 (174053046-174053349) | |
| 309-595, gnl|rn3|chr8 (119737117-119736814) | |
| 309-595, gnl|tetNig1|chrUn_random (128687250-128687544) | |
| 309-595, gnl|xenTro1|scaffold_586 (817988-818289) | |
| 661-826, gnl|bosTau2|chr29 (22474900-22474735) | |
| 661-826, gnl|canFam2|chr5 (11930662-11930477) | |
| 661-826, gnl|danRer3|chr16 (41516714-41516864) | |
| 661-826, gnl|dasNov1|scaffold_349 (3384-3201) | |
| 661-826, gnl|echTel1|scaffold_191400 (9868-9684) | |
| 661-826, gnl|fr1|chrUn (253126675-253126853) | |
| 661-826, gnl|galGal2|chr24 (378835-378651) | |
| 661-826, gnl|hg17|chr11 (124981401-124981586) | |
| 661-826, gnl|Hg17|chr11 (124981405-124981570) | |
| 661-826, gnl|mm7|chr9 (36677760-36677576) | |
| 661-826, gnl|Mm7|chr9 (36677755-36677590) | |
| 661-826, gnl|monDom2|scaffold_15 (11553080-11553265) | |
| 661-826, gnl|oryCun1|scaffold_212105 (302601-302786) | |
| 661-826, gnl|panTro1|chr9 (127063424-127063609) | |
| 661-826, gnl|rheMac2|chr14 (123732243-123732428) | |
| 661-826, gnl|rn3|chr8 (38010720-38010536) | |
| 661-826, gnl|tetNig1|chrUn_random (86355079-86355250) | |
| 661-826, gnl|xenTro1|scaffold_315 (27368-27195) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-134, gnl|bosTau2|chr29 (22482369-22482241) | |
| 6-134, gnl|Hg17|chr11 (124970984-124971108) | |
| 6-134, gnl|Mm7|chr9 (36691590-36691462) | |
| 309-595, gnl|bosTau2|chr22 (4240492-4240778) | |
| 309-595, gnl|canFam2|chr23 (16133751-16133448) | |
| 309-595, gnl|danRer3|chr16 (41494036-41494339) | |
| 309-595, gnl|dasNov1|scaffold_33871 (15361-15058) | |
| 309-595, gnl|echTel1|scaffold_230240 (652-952) | |
| 309-595, gnl|fr1|chrUn (166945313-166945008) | |
| 309-595, gnl|galGal2|chr2 (39269886-39270190) | |
| 309-595, gnl|hg17|chr3 (31596302-31596605) | |
| 309-595, gnl|Hg17|chr3 (31596306-31596592) | |
| 309-595, gnl|loxAfr1|scaffold_2138 (115890-115587) | |
| 309-595, gnl|mm7|chr9 (114941727-114941424) | |
| 309-595, gnl|Mm7|chr9 (114941721-114941435) | |
| 309-595, gnl|monDom2|scaffold_7 (87494602-87494898) | |
| 309-595, gnl|oryCun1|scaffold_161611 (5974-6277) | |
| 309-595, gnl|panTro1|chr2 (32574018-32574321) | |
| 309-595, gnl|rheMac2|chr2 (174053046-174053349) | |
| 309-595, gnl|rn3|chr8 (119737117-119736814) | |
| 309-595, gnl|tetNig1|chrUn_random (128687250-128687544) | |
| 309-595, gnl|xenTro1|scaffold_586 (817988-818289) | |
| 661-826, gnl|bosTau2|chr29 (22474900-22474735) | |
| 661-826, gnl|canFam2|chr5 (11930662-11930477) | |
| 661-826, gnl|danRer3|chr16 (41516714-41516864) | |
| 661-826, gnl|dasNov1|scaffold_349 (3384-3201) | |
| 661-826, gnl|echTel1|scaffold_191400 (9868-9684) | |
| 661-826, gnl|fr1|chrUn (253126675-253126853) | |
| 661-826, gnl|galGal2|chr24 (378835-378651) | |
| 661-826, gnl|hg17|chr11 (124981401-124981586) | |
| 661-826, gnl|Hg17|chr11 (124981405-124981570) | |
| 661-826, gnl|mm7|chr9 (36677760-36677576) | |
| 661-826, gnl|Mm7|chr9 (36677755-36677590) | |
| 661-826, gnl|monDom2|scaffold_15 (11553080-11553265) | |
| 661-826, gnl|oryCun1|scaffold_212105 (302601-302786) | |
| 661-826, gnl|panTro1|chr9 (127063424-127063609) | |
| 661-826, gnl|rheMac2|chr14 (123732243-123732428) | |
| 661-826, gnl|rn3|chr8 (38010720-38010536) | |
| 661-826, gnl|tetNig1|chrUn_random (86355079-86355250) | |
| 661-826, gnl|xenTro1|scaffold_315 (27368-27195) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| clu (0.239292) | |
| spl (0.143184) | |
| cov (0.132153) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| spl (0.143184) | |
| cov (0.132153) | |
| eep (0.122564) |