Ss1.1-rspl14_c5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCACCCTCGGCAGGAGAGACGGTTGGTTGCTCTCATCTCGTTTTCGAATATGGTGCGGA CTAAAGCAGACAGTGTCCCTGGCACCTACAGAAAAGTGGTGGCTTCTCGAGCCCCCAGGA AGGTGTTGGGTTCCTCCACCTCTGCTAATTCCACGTCGCTTTCGTCAAGGAAAGCCGAAA ACAAGTATGCAGGAGGGAATCCAGTTTGTGTGCGCCCAACTCCCAAGTGGCAAAAAGGAA TTGGAGAATTCTTCAGGCTGTCTGCTAAAGATTCAGAAAAAGAGAATAGGATTCCTGAAG AAGCAGGAAGCAGTGGATTGGGAAAAGCAAAGAGAAAAGCATGTCCTTTGCCACCTGAAG ACACAGATGACGAAAAAGAATAGAACTTTCTTAGTCATCCTTAACTGATATCTCCTGTTT ACTCTGGCATAGTTGGATGTACATTTGCATAAATGTGTTTGTTCCAATTAGCTTTGTTGA ATAGGCATTTAATTTAAAAAATGAGGCTTATATTTAGTTATTCAAAAGCAAGTAGTTATG ATATTGGAAGGTTTGTAAGATTAATTATGGGTACTTAGCTTAGTATTCAACATAATGCAG TATTTGGCTTACCTATTATTAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCACCCTCGGCAGGAGAGACGGTTGGTTGCTCTCATCTCGTTTTCGAATATGGTGCGGA CTAAAGCAGACAGTGTCCCTGGCACCTACAGAAAAGTGGTGGCTTCTCGAGCCCCCAGGA AGGTGTTGGGTTCCTCCACCTCTGCTAATTCCACGTCGCTTTCGTCAAGGAAAGCCGAAA ACAAGTATGCAGGAGGGAATCCAGTTTGTGTGCGCCCAACTCCCAAGTGGCAAAAAGGAA TTGGAGAATTCTTCAGGCTGTCTGCTAAAGATTCAGAAAAAGAGAATAGGATTCCTGAAG AAGCAGGAAGCAGTGGATTGGGAAAAGCAAAGAGAAAAGCATGTCCTTTGCCACCTGAAG ACACAGATGACGAAAAAGAATAGAACTTTCTTAGTCATCCTTAACTGATATCTCCTGTTT ACTCTGGCATAGTTGGATGTACATTTGCATAAATGTGTTTGTTCCAATTAGCTTTGTTGA ATAGGCATTTAATTTAAAAAATGAGGCTTATATTTAGTTATTCAAAAGCAAGTAGTTATG ATATTGGAAGGTTTGTAAGATTAATTATGGGTACTTAGCTTAGTATTCAACATAATGCAG TATTTGGCTTACCTATTATTAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 173-302, + strand, RNAz p=0.990576 | |
| 212-337, - strand, RNAz p=0.986203 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 173-302, + strand, RNAz p=0.990576 | |
| 212-337, - strand, RNAz p=0.986203 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 173-337, gnl|bosTau2|chr10 (30325020-30324856) | |
| 173-337, gnl|canFam2|chr30 (31838210-31838412) | |
| 173-337, gnl|danRer3|chrNA (102426576-102426780) | |
| 173-337, gnl|dasNov1|scaffold_137577 (1825-1617) | |
| 173-337, gnl|echTel1|scaffold_299881 (5426-5221) | |
| 173-337, gnl|fr1|chrUn (340105156-340104940) | |
| 173-337, gnl|hg17|chr15 (62455979-62456184) | |
| 173-337, gnl|Hg17|chr15 (62456159-62455995) | |
| 173-337, gnl|mm7|chr9 (65923193-65922992) | |
| 173-337, gnl|Mm7|chr9 (65923011-65923175) | |
| 173-337, gnl|monDom2|scaffold_12 (49037576-49037367) | |
| 173-337, gnl|oryCun1|scaffold_162922 (216-52) | |
| 173-337, gnl|panTro1|chr16 (62921142-62921347) | |
| 173-337, gnl|rheMac2|chr7 (42812853-42813058) | |
| 173-337, gnl|rn3|chr8 (70184025-70183824) | |
| 173-337, gnl|tetNig1|chr13 (11176288-11176492) | |
| 173-337, gnl|xenTro1|scaffold_295 (245567-245373) | |
| 338-573, gnl|bosTau2|chr10 (30319766-30319531) | |
| 338-573, gnl|canFam2|chr30 (31831345-31831763) | |
| 338-573, gnl|dasNov1|scaffold_31117 (13419-13827) | |
| 338-573, gnl|echTel1|scaffold_305650 (4135-3704) | |
| 338-573, gnl|hg17|chr15 (62444925-62445341) | |
| 338-573, gnl|Hg17|chr15 (62445327-62445074) | |
| 338-573, gnl|loxAfr1|scaffold_1222 (122397-121982) | |
| 338-573, gnl|mm7|chr9 (65931569-65931189) | |
| 338-573, gnl|Mm7|chr9 (65931199-65931427) | |
| 338-573, gnl|monDom2|scaffold_12 (49040924-49040496) | |
| 338-573, gnl|oryCun1|scaffold_173785 (42524-42932) | |
| 338-573, gnl|panTro1|chr16 (62910069-62910485) | |
| 338-573, gnl|rheMac2|chr7 (42799328-42799744) | |
| 338-573, gnl|rn3|chr8 (70191505-70191115) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 173-337, gnl|bosTau2|chr10 (30325020-30324856) | |
| 173-337, gnl|canFam2|chr30 (31838210-31838412) | |
| 173-337, gnl|danRer3|chrNA (102426576-102426780) | |
| 173-337, gnl|dasNov1|scaffold_137577 (1825-1617) | |
| 173-337, gnl|echTel1|scaffold_299881 (5426-5221) | |
| 173-337, gnl|fr1|chrUn (340105156-340104940) | |
| 173-337, gnl|hg17|chr15 (62455979-62456184) | |
| 173-337, gnl|Hg17|chr15 (62456159-62455995) | |
| 173-337, gnl|mm7|chr9 (65923193-65922992) | |
| 173-337, gnl|Mm7|chr9 (65923011-65923175) | |
| 173-337, gnl|monDom2|scaffold_12 (49037576-49037367) | |
| 173-337, gnl|oryCun1|scaffold_162922 (216-52) | |
| 173-337, gnl|panTro1|chr16 (62921142-62921347) | |
| 173-337, gnl|rheMac2|chr7 (42812853-42813058) | |
| 173-337, gnl|rn3|chr8 (70184025-70183824) | |
| 173-337, gnl|tetNig1|chr13 (11176288-11176492) | |
| 173-337, gnl|xenTro1|scaffold_295 (245567-245373) | |
| 338-573, gnl|bosTau2|chr10 (30319766-30319531) | |
| 338-573, gnl|canFam2|chr30 (31831345-31831763) | |
| 338-573, gnl|dasNov1|scaffold_31117 (13419-13827) | |
| 338-573, gnl|echTel1|scaffold_305650 (4135-3704) | |
| 338-573, gnl|hg17|chr15 (62444925-62445341) | |
| 338-573, gnl|Hg17|chr15 (62445327-62445074) | |
| 338-573, gnl|loxAfr1|scaffold_1222 (122397-121982) | |
| 338-573, gnl|mm7|chr9 (65931569-65931189) | |
| 338-573, gnl|Mm7|chr9 (65931199-65931427) | |
| 338-573, gnl|monDom2|scaffold_12 (49040924-49040496) | |
| 338-573, gnl|oryCun1|scaffold_173785 (42524-42932) | |
| 338-573, gnl|panTro1|chr16 (62910069-62910485) | |
| 338-573, gnl|rheMac2|chr7 (42799328-42799744) | |
| 338-573, gnl|rn3|chr8 (70191505-70191115) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fty (0.527519) | |
| clu (0.478583) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| spl (0.143184) | |
| csk (0.140746) | |
| kid (0.129735) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.527519) | |
| clu (0.478583) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| spl (0.143184) | |
| csk (0.140746) | |
| kid (0.129735) |