Ss1.1-rspl14_g15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACAAGTGAAAATGTGCTAAATATATAAAAAGGCAAACTTGAGTTATAGATGAGGAAAA ACTTTTAGACTAAAACAGACTAATGAAAGCTATTATAGACTCTGTTTTAGTCAGCCGTCT TTTGCCTAAGGAGCAACATAGTCCTGGGAGTCCCTGTTGTGGCGCAGCAGAAACAAATCT GACTAGTATCCATGAGGTCTCAGGTTCAATCCCTGGCCTCGCTCAATGGGTGGGGATCTG GTATTGCCGTGAGCTGTGATATAGGTCACAGATGCGACTTGGATCCCGAGTTGTGGTGGC TGTGGCATAGGCTGGCAGCTGTAGCTCCAATTTGACCCCAACTTCCATATGCTGCAGGTG CAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGCTATGGGCAACA GCCGCCCACTAGTTACCCCCCCCAAACTGGATCCTACAGCCAGGCTCCAAGTCAATATAG CCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGCAT GGGTGTTTATGGGCAGGAGTCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACAAGTGAAAATGTGCTAAATATATAAAAAGGCAAACTTGAGTTATAGATGAGGAAAA ACTTTTAGACTAAAACAGACTAATGAAAGCTATTATAGACTCTGTTTTAGTCAGCCGTCT TTTGCCTAAGGAGCAACATAGTCCTGGGAGTCCCTGTTGTGGCGCAGCAGAAACAAATCT GACTAGTATCCATGAGGTCTCAGGTTCAATCCCTGGCCTCGCTCAATGGGTGGGGATCTG GTATTGCCGTGAGCTGTGATATAGGTCACAGATGCGACTTGGATCCCGAGTTGTGGTGGC TGTGGCATAGGCTGGCAGCTGTAGCTCCAATTTGACCCCAACTTCCATATGCTGCAGGTG CAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGCTATGGGCAACA GCCGCCCACTAGTTACCCCCCCCAAACTGGATCCTACAGCCAGGCTCCAAGTCAATATAG CCAACAGAGCAGCAGCTACGGGCAGCAGAGTTCATTCCGACAGGACCACCCCAGTAGCAT GGGTGTTTATGGGCAGGAGTCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 3-134, - strand, RNAz p=0.996888 | |
| 35-134, + strand, RNAz p=0.994735 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-134, - strand, RNAz p=0.996888 | |
| 35-134, + strand, RNAz p=0.994735 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 3-134, gnl|bosTau2|chr5 (22449426-22449562) | |
| 3-134, gnl|canFam2|chr27 (8577212-8577095) | |
| 3-134, gnl|echTel1|scaffold_302357 (1420-1302) | |
| 3-134, gnl|hg17|chr12 (47686095-47686210) | |
| 3-134, gnl|Hg17|chr12 (47686261-47686129) | |
| 3-134, gnl|oryCun1|scaffold_204637 (49576-49710) | |
| 3-134, gnl|panTro1|chr10 (48859754-48859869) | |
| 3-134, gnl|rheMac2|chr11 (46133567-46133683) | |
| 408-546, gnl|bosTau2|chr17 (39323696-39323836) | |
| 408-546, gnl|canFam2|chr36 (17465012-17464848) | |
| 408-546, gnl|danRer3|chrUn (9072918-9073139) | |
| 408-546, gnl|dasNov1|scaffold_64302 (697-541) | |
| 408-546, gnl|echTel1|scaffold_266202 (1475-1363) | |
| 408-546, gnl|fr1|chrUn (2079852-2079655) | |
| 408-546, gnl|galGal2|chr15 (11020389-11020556) | |
| 408-546, gnl|hg17|chr1 (162977699-162977863) | |
| 408-546, gnl|Hg17|chr22 (28007576-28007716) | |
| 408-546, gnl|mm7|chr10 (52157529-52157694) | |
| 408-546, gnl|Mm7|chr11 (5035464-5035324) | |
| 408-546, gnl|monDom2|scaffold_1 (81216143-81215997) | |
| 408-546, gnl|oryCun1|scaffold_170407 (44342-44506) | |
| 408-546, gnl|panTro1|chr1 (145218231-145218400) | |
| 408-546, gnl|rheMac2|chr10 (73113546-73113382) | |
| 408-546, gnl|rn3|chr4 (24171904-24171740) | |
| 408-546, gnl|tetNig1|chr12 (6648312-6648119) | |
| 408-546, gnl|xenTro1|scaffold_207 (359985-359800) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-134, gnl|bosTau2|chr5 (22449426-22449562) | |
| 3-134, gnl|canFam2|chr27 (8577212-8577095) | |
| 3-134, gnl|echTel1|scaffold_302357 (1420-1302) | |
| 3-134, gnl|hg17|chr12 (47686095-47686210) | |
| 3-134, gnl|Hg17|chr12 (47686261-47686129) | |
| 3-134, gnl|oryCun1|scaffold_204637 (49576-49710) | |
| 3-134, gnl|panTro1|chr10 (48859754-48859869) | |
| 3-134, gnl|rheMac2|chr11 (46133567-46133683) | |
| 408-546, gnl|bosTau2|chr17 (39323696-39323836) | |
| 408-546, gnl|canFam2|chr36 (17465012-17464848) | |
| 408-546, gnl|danRer3|chrUn (9072918-9073139) | |
| 408-546, gnl|dasNov1|scaffold_64302 (697-541) | |
| 408-546, gnl|echTel1|scaffold_266202 (1475-1363) | |
| 408-546, gnl|fr1|chrUn (2079852-2079655) | |
| 408-546, gnl|galGal2|chr15 (11020389-11020556) | |
| 408-546, gnl|hg17|chr1 (162977699-162977863) | |
| 408-546, gnl|Hg17|chr22 (28007576-28007716) | |
| 408-546, gnl|mm7|chr10 (52157529-52157694) | |
| 408-546, gnl|Mm7|chr11 (5035464-5035324) | |
| 408-546, gnl|monDom2|scaffold_1 (81216143-81215997) | |
| 408-546, gnl|oryCun1|scaffold_170407 (44342-44506) | |
| 408-546, gnl|panTro1|chr1 (145218231-145218400) | |
| 408-546, gnl|rheMac2|chr10 (73113546-73113382) | |
| 408-546, gnl|rn3|chr4 (24171904-24171740) | |
| 408-546, gnl|tetNig1|chr12 (6648312-6648119) | |
| 408-546, gnl|xenTro1|scaffold_207 (359985-359800) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) |