Non-Coding RNA Search

Ss1.1-rspl15_i4.5

Sequence:


               
               CGGCGGCCGGGGCCGAGGCGCGAGGAGGATATGGAATATTATCTTGTAAAATGGAAAGGA
TGGCCAGATTCTACAAATACTTGGGAACCTTTGCAAAATCTCAAGTGCCCATTACTACTT
CAACAATTCTGTAATGACAAGCATAATTATTTATCTCAGGTAAAGAAAGGCAAAGCAATA
ACTCTAAAGGAAAATCACAGAGCTTTGAAACCTGCCATTGCTGAGTACATTGTAAAGAAG
GCTAAACAAAGGATAGCTCTGCAGAGGTGGCAGGACGAACTCAACAGAAGGAAGAATCAC
AAAGGAATGATTTTTGTTGAAAATACTGTGGACTTAGAGGGCCCACCTTCAGACTTCTAC
TACATTAATGAGTACAAACCAGCTCCGGGAATCAGCTTAGTCAATGAAGCCACCTTTGGT
TGTTCATGCACAGATTGCTTCCATGAGAAATGTTGTCCTGCTGAAGCTGGAGTTCTTTTG
GCATATAATAAAAACCAACAAATTAAAATTCCACCAGGTACCCCCATATATGAATGCAAC
TCGAGGTGTCAGTGTGGACCTGATTGTCCCAATAGGATTGTACAAAAAGGCACACAGTAT
TCACTGTGCATCTTTCGAACTAGCAATGGCTGTGGCTGGGGTGTGAAAACCCTCGTGAAG
ATTAAAAGAATGAGTTTCGTTATGGAATATGTTGGAGAGGTAATCACAAGTGAAGAAGCT
GAAAGACGGGGGCAGTTATATGACAACAAAGGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGGCCGGGGCCGAGGCGCGAGGAGGATATGGAATATTATCTTGTAAAATGGAAAGGA
TGGCCAGATTCTACAAATACTTGGGAACCTTTGCAAAATCTCAAGTGCCCATTACTACTT
CAACAATTCTGTAATGACAAGCATAATTATTTATCTCAGGTAAAGAAAGGCAAAGCAATA
ACTCTAAAGGAAAATCACAGAGCTTTGAAACCTGCCATTGCTGAGTACATTGTAAAGAAG
GCTAAACAAAGGATAGCTCTGCAGAGGTGGCAGGACGAACTCAACAGAAGGAAGAATCAC
AAAGGAATGATTTTTGTTGAAAATACTGTGGACTTAGAGGGCCCACCTTCAGACTTCTAC
TACATTAATGAGTACAAACCAGCTCCGGGAATCAGCTTAGTCAATGAAGCCACCTTTGGT
TGTTCATGCACAGATTGCTTCCATGAGAAATGTTGTCCTGCTGAAGCTGGAGTTCTTTTG
GCATATAATAAAAACCAACAAATTAAAATTCCACCAGGTACCCCCATATATGAATGCAAC
TCGAGGTGTCAGTGTGGACCTGATTGTCCCAATAGGATTGTACAAAAAGGCACACAGTAT
TCACTGTGCATCTTTCGAACTAGCAATGGCTGTGGCTGGGGTGTGAAAACCCTCGTGAAG
ATTAAAAGAATGAGTTTCGTTATGGAATATGTTGGAGAGGTAATCACAAGTGAAGAAGCT
GAAAGACGGGGGCAGTTATATGACAACAAAGGAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38569764|gb|AAR24400.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38569764|gb|AAR24400.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-269, - strand, RNAz p=0.641078
               

               
               185-304, - strand, RNAz p=0.74777

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-269, - strand, RNAz p=0.641078
               

               
               185-304, - strand, RNAz p=0.74777

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               26-702, gnl|bosTau2|chr13 (17366560-17365884)
               

               
               26-702, gnl|canFam2|chr2 (24568741-24568193)
               

               
               26-702, gnl|danRer3|chr8 (15554342-15554870)
               

               
               26-702, gnl|dasNov1|scaffold_6132 (59878-59330)
               

               
               26-702, gnl|echTel1|scaffold_313881 (18118-17570)
               

               
               26-702, gnl|fr1|chrUn (254037129-254037662)
               

               
               26-702, gnl|galGal2|chrUn (142557945-142558493)
               

               
               26-702, gnl|hg17|chr10 (14978833-14979381)
               

               
               26-702, gnl|Hg17|chr10 (14978849-14979525)
               

               
               26-702, gnl|loxAfr1|scaffold_71050 (10125-9623)
               

               
               26-702, gnl|mm7|chr2 (3382218-3381682)
               

               
               26-702, gnl|Mm7|chr2 (3382200-3381536)
               

               
               26-702, gnl|monDom2|scaffold_30 (14340519-14341068)
               

               
               26-702, gnl|oryCun1|scaffold_192404 (8983-8456)
               

               
               26-702, gnl|panTro1|chr8 (15446586-15447144)
               

               
               26-702, gnl|rheMac2|chr9 (15171731-15172279)
               

               
               26-702, gnl|rn3|chr17 (85896967-85897515)
               

               
               26-702, gnl|tetNig1|chrUn_random (108035740-108035205)
               

               
               26-702, gnl|xenTro1|scaffold_200 (964327-964871)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-702, gnl|bosTau2|chr13 (17366560-17365884)
               

               
               26-702, gnl|canFam2|chr2 (24568741-24568193)
               

               
               26-702, gnl|danRer3|chr8 (15554342-15554870)
               

               
               26-702, gnl|dasNov1|scaffold_6132 (59878-59330)
               

               
               26-702, gnl|echTel1|scaffold_313881 (18118-17570)
               

               
               26-702, gnl|fr1|chrUn (254037129-254037662)
               

               
               26-702, gnl|galGal2|chrUn (142557945-142558493)
               

               
               26-702, gnl|hg17|chr10 (14978833-14979381)
               

               
               26-702, gnl|Hg17|chr10 (14978849-14979525)
               

               
               26-702, gnl|loxAfr1|scaffold_71050 (10125-9623)
               

               
               26-702, gnl|mm7|chr2 (3382218-3381682)
               

               
               26-702, gnl|Mm7|chr2 (3382200-3381536)
               

               
               26-702, gnl|monDom2|scaffold_30 (14340519-14341068)
               

               
               26-702, gnl|oryCun1|scaffold_192404 (8983-8456)
               

               
               26-702, gnl|panTro1|chr8 (15446586-15447144)
               

               
               26-702, gnl|rheMac2|chr9 (15171731-15172279)
               

               
               26-702, gnl|rn3|chr17 (85896967-85897515)
               

               
               26-702, gnl|tetNig1|chrUn_random (108035740-108035205)
               

               
               26-702, gnl|xenTro1|scaffold_200 (964327-964871)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               eje (0.0988338)

	160-269, - strand, RNAz p=0.641078
	185-304, - strand, RNAz p=0.74777

	26-702, gnl\|bosTau2\|chr13 (17366560-17365884)
	26-702, gnl\|canFam2\|chr2 (24568741-24568193)
	26-702, gnl\|danRer3\|chr8 (15554342-15554870)
	26-702, gnl\|dasNov1\|scaffold_6132 (59878-59330)
	26-702, gnl\|echTel1\|scaffold_313881 (18118-17570)
	26-702, gnl\|fr1\|chrUn (254037129-254037662)
	26-702, gnl\|galGal2\|chrUn (142557945-142558493)
	26-702, gnl\|hg17\|chr10 (14978833-14979381)
	26-702, gnl\|Hg17\|chr10 (14978849-14979525)
	26-702, gnl\|loxAfr1\|scaffold_71050 (10125-9623)
	26-702, gnl\|mm7\|chr2 (3382218-3381682)
	26-702, gnl\|Mm7\|chr2 (3382200-3381536)
	26-702, gnl\|monDom2\|scaffold_30 (14340519-14341068)
	26-702, gnl\|oryCun1\|scaffold_192404 (8983-8456)
	26-702, gnl\|panTro1\|chr8 (15446586-15447144)
	26-702, gnl\|rheMac2\|chr9 (15171731-15172279)
	26-702, gnl\|rn3\|chr17 (85896967-85897515)
	26-702, gnl\|tetNig1\|chrUn_random (108035740-108035205)
	26-702, gnl\|xenTro1\|scaffold_200 (964327-964871)