Non-Coding RNA Search

Ss1.1-rspl16_b17.5

Sequence:


               
               ACCCTAGTTAAAACTGGAATCCTGTTCCCTTGCTCTGCTTTATATCTTGCTGTGGCACTT
ACCACTCACTACCTGATGTACTACATCTATTAGTTTATTGCCATAACTATACTGTCAACT
TCTTGAGGCCAGGGGCTTTTGTCTCCATCATCACAGTGTCTGACCATGACATTCACAAGA
GTTAGACATTCTCTTAAGGGGGTAGTGATTTGTGTGGTGTAGTTAGGCAGCTCACCCAGC
AGAGGGCAGTAGAGCCAGGGCTATAGTAACAACAATTTAAGTTTGCTTTTTAGTTGGTTA
CTTTTATTTTGTACAGAATCAAAAAGTTCAGTTCAGTTAGTAGCCTTTTTCTTTTAGTTA
GGTTGGTGTGGTCCTCAGATGGAAATCAGTCCCTGTTTTTGAAAAAGATGATTTCCAGTC
TTTAGTTGGTTCTTAGTTTAAAAGGTTATATTAGGATGAGGAATTTTTTAAAATGTTCTG
TGTAGTTTTAAAAAGCAATGTAGAATAAACAAAAGGAATTACTTTTTAAAAATGTATAAA
TGTAAGACTTTTTTCCAGTTTGGGACAGAATGGTAGCTTGTTACAGGTCTTTAGCAGCAC
TTCCTAACCTACACTGTGATAAAAAAAAATGAACATACAAAGCACCCCAGACACACCTAC
TGATAGTAGTTCTGCAGTAAGCTTCCCTTATGATATGGTTCACCAGAACTGAGGAAGGTG
TGTGGGTGGGAAAAGCAGCACAAACCGCACAACCTTTGCATTGATGCATCTTCTATGCAA
TGACAGCTGGTATGTACCTTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTAGTTAAAACTGGAATCCTGTTCCCTTGCTCTGCTTTATATCTTGCTGTGGCACTT
ACCACTCACTACCTGATGTACTACATCTATTAGTTTATTGCCATAACTATACTGTCAACT
TCTTGAGGCCAGGGGCTTTTGTCTCCATCATCACAGTGTCTGACCATGACATTCACAAGA
GTTAGACATTCTCTTAAGGGGGTAGTGATTTGTGTGGTGTAGTTAGGCAGCTCACCCAGC
AGAGGGCAGTAGAGCCAGGGCTATAGTAACAACAATTTAAGTTTGCTTTTTAGTTGGTTA
CTTTTATTTTGTACAGAATCAAAAAGTTCAGTTCAGTTAGTAGCCTTTTTCTTTTAGTTA
GGTTGGTGTGGTCCTCAGATGGAAATCAGTCCCTGTTTTTGAAAAAGATGATTTCCAGTC
TTTAGTTGGTTCTTAGTTTAAAAGGTTATATTAGGATGAGGAATTTTTTAAAATGTTCTG
TGTAGTTTTAAAAAGCAATGTAGAATAAACAAAAGGAATTACTTTTTAAAAATGTATAAA
TGTAAGACTTTTTTCCAGTTTGGGACAGAATGGTAGCTTGTTACAGGTCTTTAGCAGCAC
TTCCTAACCTACACTGTGATAAAAAAAAATGAACATACAAAGCACCCCAGACACACCTAC
TGATAGTAGTTCTGCAGTAAGCTTCCCTTATGATATGGTTCACCAGAACTGAGGAAGGTG
TGTGGGTGGGAAAAGCAGCACAAACCGCACAACCTTTGCATTGATGCATCTTCTATGCAA
TGACAGCTGGTATGTACCTTGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-325, - strand, RNAz p=0.736218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-325, - strand, RNAz p=0.736218

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               206-459, gnl|bosTau2|chr20 (14536738-14536484)
               

               
               206-459, gnl|canFam2|chr4 (65368223-65368065)
               

               
               206-459, gnl|dasNov1|scaffold_20480 (2783-2947)
               

               
               206-459, gnl|echTel1|scaffold_312584 (40007-40150)
               

               
               206-459, gnl|hg17|chr5 (52427464-52427631)
               

               
               206-459, gnl|Hg17|chr5 (52427747-52427481)
               

               
               206-459, gnl|loxAfr1|scaffold_18972 (62446-62577)
               

               
               206-459, gnl|mm7|chr13 (112004175-112004028)
               

               
               206-459, gnl|oryCun1|scaffold_118699 (26938-27029)
               

               
               206-459, gnl|panTro1|chr4_random (34980102-34979937)
               

               
               206-459, gnl|rheMac2|chr6 (50730208-50730363)
               

               
               206-459, gnl|rn3|chr2 (46891363-46891221)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-459, gnl|bosTau2|chr20 (14536738-14536484)
               

               
               206-459, gnl|canFam2|chr4 (65368223-65368065)
               

               
               206-459, gnl|dasNov1|scaffold_20480 (2783-2947)
               

               
               206-459, gnl|echTel1|scaffold_312584 (40007-40150)
               

               
               206-459, gnl|hg17|chr5 (52427464-52427631)
               

               
               206-459, gnl|Hg17|chr5 (52427747-52427481)
               

               
               206-459, gnl|loxAfr1|scaffold_18972 (62446-62577)
               

               
               206-459, gnl|mm7|chr13 (112004175-112004028)
               

               
               206-459, gnl|oryCun1|scaffold_118699 (26938-27029)
               

               
               206-459, gnl|panTro1|chr4_random (34980102-34979937)
               

               
               206-459, gnl|rheMac2|chr6 (50730208-50730363)
               

               
               206-459, gnl|rn3|chr2 (46891363-46891221)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sin (0.349895)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

	206-459, gnl\|bosTau2\|chr20 (14536738-14536484)
	206-459, gnl\|canFam2\|chr4 (65368223-65368065)
	206-459, gnl\|dasNov1\|scaffold_20480 (2783-2947)
	206-459, gnl\|echTel1\|scaffold_312584 (40007-40150)
	206-459, gnl\|hg17\|chr5 (52427464-52427631)
	206-459, gnl\|Hg17\|chr5 (52427747-52427481)
	206-459, gnl\|loxAfr1\|scaffold_18972 (62446-62577)
	206-459, gnl\|mm7\|chr13 (112004175-112004028)
	206-459, gnl\|oryCun1\|scaffold_118699 (26938-27029)
	206-459, gnl\|panTro1\|chr4_random (34980102-34979937)
	206-459, gnl\|rheMac2\|chr6 (50730208-50730363)
	206-459, gnl\|rn3\|chr2 (46891363-46891221)