Non-Coding RNA Search

Ss1.1-rspl16_d3.5

Sequence:


               
               ACGGTTATCATCAGTAGCTGGAAAGGTGCCTCAGATGGCAGTTCTCCAGATGTGCTGTAG
AGAGTACACTTAATAGCCCTGGTCCCAAATCTGGGAGAGCAGGACACACATTTATTTAGT
TAACTAGAAAAGGTTGAGACAAGGAATGTAGGTAAATGGTTGCTTCTGTGGAGAGTTGAG
CACTGGGATTGTTTTCATCATAGAGTTAAGCAATATGATCGGCTTTTTTGAGCTGTTGGG
TGACATACTAATGGCCCTGACTGAAGACCTGCAGTTATATACTACAGCTGTTGGTTTCAA
GCAGAGGCCCAGAGGACTGTCTTCCTGTGATCTCTTGGCTGTTCTGGAACCTCAGCAGAG
AATGGCTATTTCATGTGGAAGAAACAACCCACAGCTCTCCTTTTGATTGGGGGAGCCACA
GAAATGATAGAGAAAAAATGAATTAGGACTCCAAGCATCAGGATAGTTAAGTATGGGCAA
AAGCAACTGCCTAAAGTTCCATCAGCTGTCTTGTTTGTGTTGCTTATACATGGGCGTTGT
ATAAGTCACACTCATGCTTCAGACCACAATGAATGAGTTTGTAACCGGAGTGACTTTCTT
TTAACAGGGCCAGATGCAGATGGCTGGAGATGGGTGCAGATCACAGGGATTTCGAAATTC
TGAGAAAGCTGCATCGTTGCCTCAAAGTGGAGTGGCTACTGCAAATGGGAAGCTAGAATC
CACTTCTGTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGTTATCATCAGTAGCTGGAAAGGTGCCTCAGATGGCAGTTCTCCAGATGTGCTGTAG
AGAGTACACTTAATAGCCCTGGTCCCAAATCTGGGAGAGCAGGACACACATTTATTTAGT
TAACTAGAAAAGGTTGAGACAAGGAATGTAGGTAAATGGTTGCTTCTGTGGAGAGTTGAG
CACTGGGATTGTTTTCATCATAGAGTTAAGCAATATGATCGGCTTTTTTGAGCTGTTGGG
TGACATACTAATGGCCCTGACTGAAGACCTGCAGTTATATACTACAGCTGTTGGTTTCAA
GCAGAGGCCCAGAGGACTGTCTTCCTGTGATCTCTTGGCTGTTCTGGAACCTCAGCAGAG
AATGGCTATTTCATGTGGAAGAAACAACCCACAGCTCTCCTTTTGATTGGGGGAGCCACA
GAAATGATAGAGAAAAAATGAATTAGGACTCCAAGCATCAGGATAGTTAAGTATGGGCAA
AAGCAACTGCCTAAAGTTCCATCAGCTGTCTTGTTTGTGTTGCTTATACATGGGCGTTGT
ATAAGTCACACTCATGCTTCAGACCACAATGAATGAGTTTGTAACCGGAGTGACTTTCTT
TTAACAGGGCCAGATGCAGATGGCTGGAGATGGGTGCAGATCACAGGGATTTCGAAATTC
TGAGAAAGCTGCATCGTTGCCTCAAAGTGGAGTGGCTACTGCAAATGGGAAGCTAGAATC
CACTTCTGTCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26365633|dbj|BAC25264.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26365633|dbj|BAC25264.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               204-467, - strand, RNAz p=0.999875

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-467, - strand, RNAz p=0.999875

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               3-545, gnl|bosTau2|chr5 (26454258-26454801)
               

               
               3-545, gnl|Hg17|chr12 (47334895-47334306)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-545, gnl|bosTau2|chr5 (26454258-26454801)
               

               
               3-545, gnl|Hg17|chr12 (47334895-47334306)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               spl (0.286369)
               

               
               nms (0.213858)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               nms (0.213858)
               

               
               jca (0.11396)

	3-545, gnl\|bosTau2\|chr5 (26454258-26454801)
	3-545, gnl\|Hg17\|chr12 (47334895-47334306)