Ss1.1-rspl17_f22.5
|
AATAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGTAAGTGACAGCT
GTCGTGGCACCCCGCTTCTAGGGGCTTTTGGCTCTCTGTGCAGCACCATGGCGGTTGGCA
AGAATAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGACCCAT
TTTCTAAGAAAGATTGGTATGATGTGAAAGCACCAGCTATGTTCAATATAAGAAATATTG
GGAAAACACTGGTCACAAGAACTCAAGGAACCAAAATTGCATCTGATGGCCTCAAGGGTC
GTGTGTTTGAAGTGAGCCTTGCTGATCTGCAGAATGATGAAGTTGCATTTAGAAAATTCA
AGCTGATTACTGAGGATGTTCAGGGCAAAAACTGCTTGACCAACTTCCACGGCATGGATC
TTACCCGTGACAAGATGTGCTCAATGGTCAAAAAATGGCAGACCATGATTGAAGCTCACG
TTGATGTCAAGACTACCGATGGTTATTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAA
AACGCAACAATCAGATTCGGAAGACCTCTTACGCTCAGCACCAACAAGTCCGCCAAATCC
GGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAGGTGG
TCAATAAATTGATTCCAGACAGCATTGGAAAGGACATAGAAAAGGCTTGCCAGTCTATTT
ATCCGCTTCATGACGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAAT
TGGGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTTCTGGAAAAGCTACTGGGGACG
AGACAGGTGCTAAAGTTGAACGAGCTGATGGCTATGAGCCCCCAGTGCAAGAATCTGTTT
AAAATTCAGATTTTTAATGGTGACAAATAAAAGATCTTATTTGTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGTAAGTGACAGCT
GTCGTGGCACCCCGCTTCTAGGGGCTTTTGGCTCTCTGTGCAGCACCATGGCGGTTGGCA
AGAATAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGACCCAT
TTTCTAAGAAAGATTGGTATGATGTGAAAGCACCAGCTATGTTCAATATAAGAAATATTG
GGAAAACACTGGTCACAAGAACTCAAGGAACCAAAATTGCATCTGATGGCCTCAAGGGTC
GTGTGTTTGAAGTGAGCCTTGCTGATCTGCAGAATGATGAAGTTGCATTTAGAAAATTCA
AGCTGATTACTGAGGATGTTCAGGGCAAAAACTGCTTGACCAACTTCCACGGCATGGATC
TTACCCGTGACAAGATGTGCTCAATGGTCAAAAAATGGCAGACCATGATTGAAGCTCACG
TTGATGTCAAGACTACCGATGGTTATTTGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAA
AACGCAACAATCAGATTCGGAAGACCTCTTACGCTCAGCACCAACAAGTCCGCCAAATCC
GGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAGGTGG
TCAATAAATTGATTCCAGACAGCATTGGAAAGGACATAGAAAAGGCTTGCCAGTCTATTT
ATCCGCTTCATGACGTCTTCGTTAGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAAT
TGGGAAAACTCATGGAGCTACATGGTGAAGGTAGTAGTTCTGGAAAAGCTACTGGGGACG
AGACAGGTGCTAAAGTTGAACGAGCTGATGGCTATGAGCCCCCAGTGCAAGAATCTGTTT
AAAATTCAGATTTTTAATGGTGACAAATAAAAGATCTTATTTGTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|50402817|gb|AAT76631.1| |
Protein identifier
|
gi|50402817|gb|AAT76631.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
bla (9.32604) |
|
spl (8.59107) |
|
thg (8.24141) |
|
eje (7.0172) |
|
ova (6.84401) |
|
ski (5.86941) |
|
gul (5.86042) |
|
sin (5.59832) |
|
mgp (5.53633) |
|
mcp (5.46075) |
|
fat (5.15996) |
|
lnt (4.83848) |
|
med (4.76633) |
|
tbr (4.31699) |
|
pan (4.24729) |
|
sug (4.20061) |
|
lyg (4.12618) |
|
pro (4.09626) |
|
fty (4.04431) |
|
nca (3.96934) |
|
isp (3.60902) |
|
pgl (3.5545) |
|
ill (3.33626) |
|
eye (3.23956) |
|
mga (3.2041) |
|
lin (3.05766) |
|
csk (2.95567) |
|
nep (2.9428) |
|
rec (2.94219) |
|
nco (2.91121) |
|
eru (2.7611) |
|
ret (2.7034) |
|
elu (2.6975) |
|
nmm (2.65604) |
|
jca (2.62108) |
|
eep (2.57384) |
|
pty (2.56886) |
|
nje (2.4888) |
|
sag (2.3753) |
|
liv (2.34055) |
|
col (2.34009) |
|
tra (2.33875) |
|
nlu (2.30017) |
|
ese (2.27704) |
|
duo (2.24641) |
|
ldo (2.23106) |
|
ece (2.06375) |
|
hea (2.04499) |
|
jej (1.97844) |
|
ssp (1.89728) |
|
ebs (1.89282) |
|
mas (1.89274) |
|
sme (1.83262) |
|
fli (1.82593) |
|
nbm (1.58919) |
|
ecc (1.49546) |
|
ste (1.48729) |
|
mgm (1.44274) |
|
kid (1.42709) |
|
hlv (1.39256) |
|
aor (1.36692) |
|
vin (1.33023) |
|
ute (1.32784) |
|
amn (1.25313) |
|
tes (1.24688) |
|
lun (1.20391) |
|
fcc (1.18671) |
|
spc (1.13366) |
|
sto (1.07894) |
|
ton (1.053) |
|
fhi (1.01747) |
|
cbe (0.956938) |
|
cmu (0.931966) |
|
bfe (0.899146) |
|
cte (0.87822) |
|
hyp (0.85702) |
|
fce (0.814775) |
|
eli (0.759071) |
|
nms (0.641574) |
|
cly (0.361925) |
|
fbs (0.350693) |
|
csp (0.322373) |
|
fco (0.314416) |
|
cag (0.302389) |
|
clu (0.239292) |
|
cbl (0.229595) |
|
cut (0.169924) |
|
cli (0.152812) |
|
che (0.136314) |
|
bla (9.32604) |
|
spl (8.59107) |
|
thg (8.24141) |
|
eje (7.0172) |
|
ova (6.84401) |
|
ski (5.86941) |
|
gul (5.86042) |
|
sin (5.59832) |
|
mgp (5.53633) |
|
mcp (5.46075) |
|
fat (5.15996) |
|
lnt (4.83848) |
|
med (4.76633) |
|
tbr (4.31699) |
|
pan (4.24729) |
|
sug (4.20061) |
|
lyg (4.12618) |
|
pro (4.09626) |
|
fty (4.04431) |
|
nca (3.96934) |
|
isp (3.60902) |
|
pgl (3.5545) |
|
ill (3.33626) |
|
eye (3.23956) |
|
mga (3.2041) |
|
lin (3.05766) |
|
csk (2.95567) |
|
nep (2.9428) |
|
rec (2.94219) |
|
nco (2.91121) |
|
eru (2.7611) |
|
ret (2.7034) |
|
elu (2.6975) |
|
nmm (2.65604) |
|
jca (2.62108) |
|
eep (2.57384) |
|
pty (2.56886) |
|
nje (2.4888) |
|
sag (2.3753) |
|
liv (2.34055) |
|
col (2.34009) |
|
tra (2.33875) |
|
nlu (2.30017) |
|
ese (2.27704) |
|
duo (2.24641) |
|
ldo (2.23106) |
|
ece (2.06375) |
|
hea (2.04499) |
|
jej (1.97844) |
|
ssp (1.89728) |
|
ebs (1.89282) |
|
mas (1.89274) |
|
sme (1.83262) |
|
fli (1.82593) |
|
nbm (1.58919) |
|
ecc (1.49546) |
|
ste (1.48729) |
|
mgm (1.44274) |
|
kid (1.42709) |
|
hlv (1.39256) |
|
aor (1.36692) |
|
vin (1.33023) |
|
ute (1.32784) |
|
amn (1.25313) |
|
tes (1.24688) |
|
lun (1.20391) |
|
fcc (1.18671) |
|
spc (1.13366) |
|
sto (1.07894) |
|
ton (1.053) |
|
fhi (1.01747) |
|
cbe (0.956938) |
|
cmu (0.931966) |
|
bfe (0.899146) |
|
cte (0.87822) |
|
hyp (0.85702) |
|
fce (0.814775) |
|
eli (0.759071) |
|
nms (0.641574) |
|
cly (0.361925) |
|
fbs (0.350693) |
|
csp (0.322373) |
|
fco (0.314416) |
|
cag (0.302389) |
|
clu (0.239292) |
|
cbl (0.229595) |
|
cut (0.169924) |
|
cli (0.152812) |
|
che (0.136314) |
