Ss1.1-rspl17_h14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGGGCCACCAGACCGGAAGCACAGCCCTCCAACCCGATCCTCCTCGTCTGGGTTGAAA ACCGGGCGACTCCAAGATGCCGGCTTATCACTCTTCCCTCATGGACCCCGACACCAAACT CATTGGAAACATGGCATTGCTGCCTATCAGGAGTCAGTTCAAAGGACCTGCCCCTAGAGA AACAAAAGATACAGATATTGTGGATGAAGCTATCTATTACTTCAAGGCCAATGTCTTCTT CAAAAACTATGAAATTAAGAATGAAGCTGATAGGACCTTGATATATATAACTCTCTACAT TTCTGAGTGTCTAAAGAAACTCCAAAAGTGCAATTCTAAAAGCCAAGGCGAGAAGGAAAT GTATACATTGGGGATCACTAATTTTCCCATTCCTGGAGAGCCTGGTTTTCCACTTAATGC AATTTATGCCAAACCTGCAAACAAACAGGAAGATGAAGTGATGAGGGCCTATTTACAACA GCTGAGGCAAGAGACTGGACTGAGACTTTGTGAAAAAGTTTTTGACCCTCAGAATGATAA ACCCAGCAAGTGGTGGACTTGCTTTGTGAAGAGACAATTCATGAACAAGAGTCTTTCAGG ACCCGGACAGTAAAAGGAGCCTTGGGCAGACACTGTCTCCACAGCTGTGGGCAGCATTTT TCAGCAAGATGTACACAGTTCTTTGCCTTCATTTCGTAAAGTTTTATACAGAGAAGAGAA GAGAGCATGTCTTGAAGAGCTCTTTATCAAGAATTTGGGGTGGGGGGCTGGAGAAGAGTG GGTTGTTGAGTGATTTGAAATTTTCTGCAGTATTAAGCTGGTGCTTAATAATAAAGAAAT TTCTAACACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGGGCCACCAGACCGGAAGCACAGCCCTCCAACCCGATCCTCCTCGTCTGGGTTGAAA ACCGGGCGACTCCAAGATGCCGGCTTATCACTCTTCCCTCATGGACCCCGACACCAAACT CATTGGAAACATGGCATTGCTGCCTATCAGGAGTCAGTTCAAAGGACCTGCCCCTAGAGA AACAAAAGATACAGATATTGTGGATGAAGCTATCTATTACTTCAAGGCCAATGTCTTCTT CAAAAACTATGAAATTAAGAATGAAGCTGATAGGACCTTGATATATATAACTCTCTACAT TTCTGAGTGTCTAAAGAAACTCCAAAAGTGCAATTCTAAAAGCCAAGGCGAGAAGGAAAT GTATACATTGGGGATCACTAATTTTCCCATTCCTGGAGAGCCTGGTTTTCCACTTAATGC AATTTATGCCAAACCTGCAAACAAACAGGAAGATGAAGTGATGAGGGCCTATTTACAACA GCTGAGGCAAGAGACTGGACTGAGACTTTGTGAAAAAGTTTTTGACCCTCAGAATGATAA ACCCAGCAAGTGGTGGACTTGCTTTGTGAAGAGACAATTCATGAACAAGAGTCTTTCAGG ACCCGGACAGTAAAAGGAGCCTTGGGCAGACACTGTCTCCACAGCTGTGGGCAGCATTTT TCAGCAAGATGTACACAGTTCTTTGCCTTCATTTCGTAAAGTTTTATACAGAGAAGAGAA GAGAGCATGTCTTGAAGAGCTCTTTATCAAGAATTTGGGGTGGGGGGCTGGAGAAGAGTG GGTTGTTGAGTGATTTGAAATTTTCTGCAGTATTAAGCTGGTGCTTAATAATAAAGAAAT TTCTAACACTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 117-303, - strand, RNAz p=0.651904 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-303, - strand, RNAz p=0.651904 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 38-867, gnl|bosTau2|chr5 (26828561-26829391) | |
| 38-867, gnl|Hg17|chr11 (93561850-93561010) | |
| 326-455, gnl|bosTau2|chr17 (30278469-30278598) | |
| 326-455, gnl|canFam2|chr26 (11287054-11287214) | |
| 326-455, gnl|danRer3|chr21 (7187411-7187566) | |
| 326-455, gnl|dasNov1|scaffold_26191 (32776-32941) | |
| 326-455, gnl|echTel1|scaffold_312394 (205732-205573) | |
| 326-455, gnl|fr1|chrUn (292381773-292381629) | |
| 326-455, gnl|galGal2|chr15 (5239570-5239433) | |
| 326-455, gnl|hg17|chr12 (109337066-109337227) | |
| 326-455, gnl|Hg17|chr12 (109337211-109337082) | |
| 326-455, gnl|loxAfr1|scaffold_8228 (1986-2147) | |
| 326-455, gnl|mm7|chr5 (121638490-121638336) | |
| 326-455, gnl|Mm7|chr5 (121638343-121638472) | |
| 326-455, gnl|monDom2|scaffold_97 (922926-922770) | |
| 326-455, gnl|oryCun1|scaffold_106916 (1425-1599) | |
| 326-455, gnl|panTro1|chr10 (111916082-111916249) | |
| 326-455, gnl|rheMac2|chr11 (111366410-111366577) | |
| 326-455, gnl|rn3|chr12 (35232429-35232583) | |
| 326-455, gnl|tetNig1|chrUn_random (90794573-90794709) | |
| 326-455, gnl|xenTro1|scaffold_501 (515584-515436) | |
| 549-853, gnl|bosTau2|chr17 (30279538-30279856) | |
| 549-853, gnl|Hg17|chr12 (109335744-109335426) | |
| 549-853, gnl|Mm7|chr5 (121640089-121640348) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-867, gnl|bosTau2|chr5 (26828561-26829391) | |
| 38-867, gnl|Hg17|chr11 (93561850-93561010) | |
| 326-455, gnl|bosTau2|chr17 (30278469-30278598) | |
| 326-455, gnl|canFam2|chr26 (11287054-11287214) | |
| 326-455, gnl|danRer3|chr21 (7187411-7187566) | |
| 326-455, gnl|dasNov1|scaffold_26191 (32776-32941) | |
| 326-455, gnl|echTel1|scaffold_312394 (205732-205573) | |
| 326-455, gnl|fr1|chrUn (292381773-292381629) | |
| 326-455, gnl|galGal2|chr15 (5239570-5239433) | |
| 326-455, gnl|hg17|chr12 (109337066-109337227) | |
| 326-455, gnl|Hg17|chr12 (109337211-109337082) | |
| 326-455, gnl|loxAfr1|scaffold_8228 (1986-2147) | |
| 326-455, gnl|mm7|chr5 (121638490-121638336) | |
| 326-455, gnl|Mm7|chr5 (121638343-121638472) | |
| 326-455, gnl|monDom2|scaffold_97 (922926-922770) | |
| 326-455, gnl|oryCun1|scaffold_106916 (1425-1599) | |
| 326-455, gnl|panTro1|chr10 (111916082-111916249) | |
| 326-455, gnl|rheMac2|chr11 (111366410-111366577) | |
| 326-455, gnl|rn3|chr12 (35232429-35232583) | |
| 326-455, gnl|tetNig1|chrUn_random (90794573-90794709) | |
| 326-455, gnl|xenTro1|scaffold_501 (515584-515436) | |
| 549-853, gnl|bosTau2|chr17 (30279538-30279856) | |
| 549-853, gnl|Hg17|chr12 (109335744-109335426) | |
| 549-853, gnl|Mm7|chr5 (121640089-121640348) |
| Expressed library(ies): 73 entry(ies) | More info |
| Expressed library(ies): 73 entry(ies) | Help | Less info |
| cmu (2.42311) | |
| sto (1.79824) | |
| cte (1.75644) | |
| spl (1.71821) | |
| csk (1.26671) | |
| sin (1.04969) | |
| sme (0.91631) | |
| fty (0.879198) | |
| thg (0.760746) | |
| lnt (0.711541) | |
| nmm (0.664011) | |
| ova (0.645661) | |
| nlu (0.575043) | |
| spc (0.566829) | |
| nep (0.551775) | |
| ste (0.540833) | |
| ill (0.526778) | |
| fbs (0.526039) | |
| pro (0.512033) | |
| cut (0.509771) | |
| fhi (0.508733) | |
| tra (0.492368) | |
| pgl (0.473934) | |
| ecc (0.46014) | |
| ece (0.45861) | |
| jca (0.45584) | |
| hea (0.408998) | |
| nbm (0.397298) | |
| kid (0.389206) | |
| sug (0.381874) | |
| sag (0.36543) | |
| ebs (0.354904) | |
| med (0.348756) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cje (0.330469) | |
| csp (0.322373) | |
| eli (0.303628) | |
| lin (0.291206) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 73 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (2.42311) | |
| sto (1.79824) | |
| cte (1.75644) | |
| spl (1.71821) | |
| csk (1.26671) | |
| sin (1.04969) | |
| sme (0.91631) | |
| fty (0.879198) | |
| thg (0.760746) | |
| lnt (0.711541) | |
| nmm (0.664011) | |
| ova (0.645661) | |
| nlu (0.575043) | |
| spc (0.566829) | |
| nep (0.551775) | |
| ste (0.540833) | |
| ill (0.526778) | |
| fbs (0.526039) | |
| pro (0.512033) | |
| cut (0.509771) | |
| fhi (0.508733) | |
| tra (0.492368) | |
| pgl (0.473934) | |
| ecc (0.46014) | |
| ece (0.45861) | |
| jca (0.45584) | |
| hea (0.408998) | |
| nbm (0.397298) | |
| kid (0.389206) | |
| sug (0.381874) | |
| sag (0.36543) | |
| ebs (0.354904) | |
| med (0.348756) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cje (0.330469) | |
| csp (0.322373) | |
| eli (0.303628) | |
| lin (0.291206) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) | |
| jej (0.0989218) |