Non-Coding RNA Search

Ss1.1-rspl17_h4.5

Sequence:


               
               CATTTATCCTAACAAATTGATATTTTTTATTAAGCCTCCATGTGGCTATGAATGCAAGCT
ATATATATAGTGAGTTTTTCTAAATTAAGCGGAACTGTGCTACTTGATTTTTTAAAACTA
ACTGGTTAGCAAGTGCGTATCTCTAAGGCGTCCAGGCTGCCGGGTGAGGCCGAGGACGGG
GCGGGGTGGGGGCACAACGGGGCTGTAAGTGTAGCCCGGGGAGGGACGCGGGGCGAGGCC
GGCCGCGCCACCCGCTGGCCTGCCAGGTGGTTCTGGCATCCTCTGGGGACAGCCGGGTTT
GGGTCTCCTGGGCAGAGTGACCCTGCAGAGAGCACTGAGAGCCCCGGTGGCCTGCCAGCA
AGTGACCAGCTTCTCACTCCAGTCTCAAGTGGCTGTAGGTAGGATAGACTCAAAGCACAT
TGTGAATAGAACTCAAACGAAAACATCAACTTTGTTCCCTCCGACATGTTACTGCAAAGT
TGTCCCCTGATGCTTTGCTCCCAAGAGCTGGCGGGAGGACGCGGAGCCCAACCCCTGGGA
GCCGCCTGCTCTTGACCCTCGGCGCACGCGGTCCAGCCGCTCCGTAACGGAGAGCAGGTG
TGTGTGGCCTCTGGTGGCGGAGGAGCGAGGGCGCTGTCGTCACCCTGACACAGGGTCTCC
AGCCCCTCGGGACGTGCCGCTCTCCAGGACACCGCGCTCAAGCTCGCAGTTGATACTAAA
GTCAGACATCAGTTCTTTCTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTATCCTAACAAATTGATATTTTTTATTAAGCCTCCATGTGGCTATGAATGCAAGCT
ATATATATAGTGAGTTTTTCTAAATTAAGCGGAACTGTGCTACTTGATTTTTTAAAACTA
ACTGGTTAGCAAGTGCGTATCTCTAAGGCGTCCAGGCTGCCGGGTGAGGCCGAGGACGGG
GCGGGGTGGGGGCACAACGGGGCTGTAAGTGTAGCCCGGGGAGGGACGCGGGGCGAGGCC
GGCCGCGCCACCCGCTGGCCTGCCAGGTGGTTCTGGCATCCTCTGGGGACAGCCGGGTTT
GGGTCTCCTGGGCAGAGTGACCCTGCAGAGAGCACTGAGAGCCCCGGTGGCCTGCCAGCA
AGTGACCAGCTTCTCACTCCAGTCTCAAGTGGCTGTAGGTAGGATAGACTCAAAGCACAT
TGTGAATAGAACTCAAACGAAAACATCAACTTTGTTCCCTCCGACATGTTACTGCAAAGT
TGTCCCCTGATGCTTTGCTCCCAAGAGCTGGCGGGAGGACGCGGAGCCCAACCCCTGGGA
GCCGCCTGCTCTTGACCCTCGGCGCACGCGGTCCAGCCGCTCCGTAACGGAGAGCAGGTG
TGTGTGGCCTCTGGTGGCGGAGGAGCGAGGGCGCTGTCGTCACCCTGACACAGGGTCTCC
AGCCCCTCGGGACGTGCCGCTCTCCAGGACACCGCGCTCAAGCTCGCAGTTGATACTAAA
GTCAGACATCAGTTCTTTCTTTTA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-515, gnl|bosTau2|chr13 (31633480-31633998)
               

               
               1-515, gnl|canFam2|chr2 (36969427-36968970)
               

               
               1-515, gnl|dasNov1|scaffold_39557 (4047-3511)
               

               
               1-515, gnl|echTel1|scaffold_30931 (2476-1975)
               

               
               1-515, gnl|galGal2|chr2 (9677548-9678085)
               

               
               1-515, gnl|hg17|chr10 (847981-848419)
               

               
               1-515, gnl|Hg17|chr10 (848595-848054)
               

               
               1-515, gnl|mm7|chr13 (9084664-9084221)
               

               
               1-515, gnl|Mm7|chr13 (9084043-9084595)
               

               
               1-515, gnl|monDom2|scaffold_7 (24087027-24087631)
               

               
               1-515, gnl|oryCun1|scaffold_164229 (11222-10745)
               

               
               1-515, gnl|panTro1|chr8 (904730-905168)
               

               
               1-515, gnl|rheMac2|chr9 (990520-990967)
               

               
               1-515, gnl|rn3|chr17 (71944957-71945414)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr13 (31633480-31633998)
               

               
               1-515, gnl|canFam2|chr2 (36969427-36968970)
               

               
               1-515, gnl|dasNov1|scaffold_39557 (4047-3511)
               

               
               1-515, gnl|echTel1|scaffold_30931 (2476-1975)
               

               
               1-515, gnl|galGal2|chr2 (9677548-9678085)
               

               
               1-515, gnl|hg17|chr10 (847981-848419)
               

               
               1-515, gnl|Hg17|chr10 (848595-848054)
               

               
               1-515, gnl|mm7|chr13 (9084664-9084221)
               

               
               1-515, gnl|Mm7|chr13 (9084043-9084595)
               

               
               1-515, gnl|monDom2|scaffold_7 (24087027-24087631)
               

               
               1-515, gnl|oryCun1|scaffold_164229 (11222-10745)
               

               
               1-515, gnl|panTro1|chr8 (904730-905168)
               

               
               1-515, gnl|rheMac2|chr9 (990520-990967)
               

               
               1-515, gnl|rn3|chr17 (71944957-71945414)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               spl (0.143184)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               spl (0.143184)
               

               
               ese (0.126502)

	1-515, gnl\|bosTau2\|chr13 (31633480-31633998)
	1-515, gnl\|canFam2\|chr2 (36969427-36968970)
	1-515, gnl\|dasNov1\|scaffold_39557 (4047-3511)
	1-515, gnl\|echTel1\|scaffold_30931 (2476-1975)
	1-515, gnl\|galGal2\|chr2 (9677548-9678085)
	1-515, gnl\|hg17\|chr10 (847981-848419)
	1-515, gnl\|Hg17\|chr10 (848595-848054)
	1-515, gnl\|mm7\|chr13 (9084664-9084221)
	1-515, gnl\|Mm7\|chr13 (9084043-9084595)
	1-515, gnl\|monDom2\|scaffold_7 (24087027-24087631)
	1-515, gnl\|oryCun1\|scaffold_164229 (11222-10745)
	1-515, gnl\|panTro1\|chr8 (904730-905168)
	1-515, gnl\|rheMac2\|chr9 (990520-990967)
	1-515, gnl\|rn3\|chr17 (71944957-71945414)