Non-Coding RNA Search

Ss1.1-rspl17_i22.5

Sequence:


               
               AAAAAAAAATAGGTTAGAAGGTGAATGTCCCAAATTGCCATGACAAGTACGCTATTTATA
TGCCCTGACCACCGTATGAGGCTGGTCTTTGGGACCAACCATCATTTCTTCTGCACTTTA
ATTTATTTTAGATAAACTTTGCCCATGGATCAAAAAAGTCTTTTTTTTTTTTTTTCTTTT
CTCATATAAGAAATCTAGGTGTAAATATTGAGTACAGGAAAAAAAAGATCTCTGTAAAGT
CTATTGAGTGGTACACCCACTTGCTTCCATGACTGAGTCTCCTCAGTCGACGATGAAGTA
GCCTTTGAAGGCTAGAACTGTCAAAAGGCTTCTGAGTTTATTTCCAATCACCAAAAAAAA
TCAGGATTGTCATTTTTGCCGAGTGTGTGAAGGGAAAATAGGGGCATTCCTTTCCACTCA
GGCTTAGCTCATGGGCTGAATGCATAGCTTTCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAATAGGTTAGAAGGTGAATGTCCCAAATTGCCATGACAAGTACGCTATTTATA
TGCCCTGACCACCGTATGAGGCTGGTCTTTGGGACCAACCATCATTTCTTCTGCACTTTA
ATTTATTTTAGATAAACTTTGCCCATGGATCAAAAAAGTCTTTTTTTTTTTTTTTCTTTT
CTCATATAAGAAATCTAGGTGTAAATATTGAGTACAGGAAAAAAAAGATCTCTGTAAAGT
CTATTGAGTGGTACACCCACTTGCTTCCATGACTGAGTCTCCTCAGTCGACGATGAAGTA
GCCTTTGAAGGCTAGAACTGTCAAAAGGCTTCTGAGTTTATTTCCAATCACCAAAAAAAA
TCAGGATTGTCATTTTTGCCGAGTGTGTGAAGGGAAAATAGGGGCATTCCTTTCCACTCA
GGCTTAGCTCATGGGCTGAATGCATAGCTTTCTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-361, - strand, RNAz p=0.964187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-361, - strand, RNAz p=0.964187

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-456, gnl|bosTau2|chr6 (15399192-15399621)
               

               
               8-456, gnl|Hg17|chr4 (89354053-89354486)
               

               
               8-456, gnl|Mm7|chr5 (103694256-103694670)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-456, gnl|bosTau2|chr6 (15399192-15399621)
               

               
               8-456, gnl|Hg17|chr4 (89354053-89354486)
               

               
               8-456, gnl|Mm7|chr5 (103694256-103694670)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               amn (0.417711)
               

               
               cki (0.165235)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cki (0.165235)
               

               
               spl (0.143184)

	8-456, gnl\|bosTau2\|chr6 (15399192-15399621)
	8-456, gnl\|Hg17\|chr4 (89354053-89354486)
	8-456, gnl\|Mm7\|chr5 (103694256-103694670)