Non-Coding RNA Search

Ss1.1-rspl17_p18.5

Sequence:


               
               GCATGAGCTCCAAGCTTCAAAAGGATTCTCACGCGCGGAGGAGCAGTTTATTTTTCATCA
AGTTATCTTCCGTGTCTTTTTGAAGCAGCTTCGAAGCATAAACACCTATTTCTGCTTTAA
ACTTTTTTAATGGTTTCTAAATTCATGGGACAACCAAAGCCAGAAAGCCTCACGCTTTGG
AGGAGCATTTGATGTCAGCAATGCCTAGAAAAGAGCCAAAGATGTTTGTCTTGCTCTATG
TTACAAGTTTTGCCATTTGTGCAAGTGGACAACCTCGGGGTAATCAGTTCAAAGGCGATA
CCTACTCCCCGAGATATATCTGTAGCATTCCTGGCTTACCTGGACCTCCAGGCCCCCCTG
GAGCAAATGGTTCCCCTGGGCCCCATGGTCGGATCGGCCTTCCGGGACGAGATGGTAGAG
ACGGCAGGAAAGGAGAAAAAGGTGAAAAGGGGGCTGCAGGTTTGAGAGGTAAGACTGGAC
CACTGGGCCTTGCTGGAGAGAAAGGGGACCAAGGAGAGACTGGGAAAAAAGGACCCATGG
GACCTGAGGGAGAGAAAGGAGAAGTAGGTCCTGTTGGGCCTCCTGGACCAAAGGGAGACA
GAGGAGAGAAAGGGGAGCCGGGGCTGCCTGGTGTTTGTAGATGTGGAAGCATCGTTCTCA
AATCTGCTTTTTCTGTTGGCATCACAACCAGCTACCCAGAAGAAAGGCTACCAATCATAT
TTAACAAGGTCCTCTTCAATGAGGGAGAGCATTACAACCCTGCAACGGGGAAGTTCATCT
GTGCTTTCCCAGGAATCTATTACTTTTCTTATGATATCACATTGGCAAATAAGCATCTGG
CAATTGGGCTGGTACACAATGGGCAGTACCGGATAAAGACCTTTGATGCCAACACAGGAA
ACCATGATGTGGCTTCAGGGTCCACAGTCATTTATCTTCAGCCAGAAGATGAAGTCTGGC
TGGAGATCTTCTTCACTGACCAGAATGGCCTCTTCTCAGACCCAGGTTGGGCAGACAGCT
TGTTCTCCGGATTTCTCCTGTACGTTGACACAGATTATCTAGATTCCATATCAGAAGACG
ACGAGCTCTGATCAGCACCGTTGGCCTGAATGTCCCAGGATCCTTGTGGCAGACACTTTG
ATTTAATCTGGGCCCCTGCCAGGTGGAACAAGAAGAAATGAGCTCCAAAAAGACTCCCAC
TCAGATTCCAGAGCATTTACAGACATAGCAGAATCTATCTATTAAAGCAAGTTGGAACCA
CCAAACTGCTGAAATCATGCCGAAATGAATTTATAAAACAATAACCTCAGATATGTTTTC
TCAAAAGTGATGGTTCATAAATATACAAATTAAAGACAATGTTACAAATTTTCTATTAAA
TTCCTTGAGTGCTGAAACAAAGCTGGCAATGATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGAGCTCCAAGCTTCAAAAGGATTCTCACGCGCGGAGGAGCAGTTTATTTTTCATCA
AGTTATCTTCCGTGTCTTTTTGAAGCAGCTTCGAAGCATAAACACCTATTTCTGCTTTAA
ACTTTTTTAATGGTTTCTAAATTCATGGGACAACCAAAGCCAGAAAGCCTCACGCTTTGG
AGGAGCATTTGATGTCAGCAATGCCTAGAAAAGAGCCAAAGATGTTTGTCTTGCTCTATG
TTACAAGTTTTGCCATTTGTGCAAGTGGACAACCTCGGGGTAATCAGTTCAAAGGCGATA
CCTACTCCCCGAGATATATCTGTAGCATTCCTGGCTTACCTGGACCTCCAGGCCCCCCTG
GAGCAAATGGTTCCCCTGGGCCCCATGGTCGGATCGGCCTTCCGGGACGAGATGGTAGAG
ACGGCAGGAAAGGAGAAAAAGGTGAAAAGGGGGCTGCAGGTTTGAGAGGTAAGACTGGAC
CACTGGGCCTTGCTGGAGAGAAAGGGGACCAAGGAGAGACTGGGAAAAAAGGACCCATGG
GACCTGAGGGAGAGAAAGGAGAAGTAGGTCCTGTTGGGCCTCCTGGACCAAAGGGAGACA
GAGGAGAGAAAGGGGAGCCGGGGCTGCCTGGTGTTTGTAGATGTGGAAGCATCGTTCTCA
AATCTGCTTTTTCTGTTGGCATCACAACCAGCTACCCAGAAGAAAGGCTACCAATCATAT
TTAACAAGGTCCTCTTCAATGAGGGAGAGCATTACAACCCTGCAACGGGGAAGTTCATCT
GTGCTTTCCCAGGAATCTATTACTTTTCTTATGATATCACATTGGCAAATAAGCATCTGG
CAATTGGGCTGGTACACAATGGGCAGTACCGGATAAAGACCTTTGATGCCAACACAGGAA
ACCATGATGTGGCTTCAGGGTCCACAGTCATTTATCTTCAGCCAGAAGATGAAGTCTGGC
TGGAGATCTTCTTCACTGACCAGAATGGCCTCTTCTCAGACCCAGGTTGGGCAGACAGCT
TGTTCTCCGGATTTCTCCTGTACGTTGACACAGATTATCTAGATTCCATATCAGAAGACG
ACGAGCTCTGATCAGCACCGTTGGCCTGAATGTCCCAGGATCCTTGTGGCAGACACTTTG
ATTTAATCTGGGCCCCTGCCAGGTGGAACAAGAAGAAATGAGCTCCAAAAAGACTCCCAC
TCAGATTCCAGAGCATTTACAGACATAGCAGAATCTATCTATTAAAGCAAGTTGGAACCA
CCAAACTGCTGAAATCATGCCGAAATGAATTTATAAAACAATAACCTCAGATATGTTTTC
TCAAAAGTGATGGTTCATAAATATACAAATTAAAGACAATGTTACAAATTTTCTATTAAA
TTCCTTGAGTGCTGAAACAAAGCTGGCAATGATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               C1QT7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               C1QT7_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               455-573, - strand, RNAz p=0.917083
               

               
               654-813, - strand, RNAz p=0.995918
               

               
               854-1013, - strand, RNAz p=0.988127

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-573, - strand, RNAz p=0.917083
               

               
               654-813, - strand, RNAz p=0.995918
               

               
               854-1013, - strand, RNAz p=0.988127

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-213, gnl|bosTau2|chr6 (63073373-63073162)
               

               
               3-213, gnl|Hg17|chr4 (15017891-15018100)
               

               
               3-213, gnl|Mm7|chr5 (42835408-42835598)
               


               
               455-1416, gnl|bosTau2|chr6 (62947044-62946082)
               

               
               455-1416, gnl|Hg17|chr4 (15120056-15121005)
               

               
               455-1416, gnl|Mm7|chr5 (42935262-42936206)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-213, gnl|bosTau2|chr6 (63073373-63073162)
               

               
               3-213, gnl|Hg17|chr4 (15017891-15018100)
               

               
               3-213, gnl|Mm7|chr5 (42835408-42835598)
               


               
               455-1416, gnl|bosTau2|chr6 (62947044-62946082)
               

               
               455-1416, gnl|Hg17|chr4 (15120056-15121005)
               

               
               455-1416, gnl|Mm7|chr5 (42935262-42936206)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               aor (0.390549)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	455-573, - strand, RNAz p=0.917083
	654-813, - strand, RNAz p=0.995918
	854-1013, - strand, RNAz p=0.988127

	3-213, gnl\|bosTau2\|chr6 (63073373-63073162)
	3-213, gnl\|Hg17\|chr4 (15017891-15018100)
	3-213, gnl\|Mm7\|chr5 (42835408-42835598)

	455-1416, gnl\|bosTau2\|chr6 (62947044-62946082)
	455-1416, gnl\|Hg17\|chr4 (15120056-15121005)
	455-1416, gnl\|Mm7\|chr5 (42935262-42936206)

	aor (0.390549)
	hea (0.204499)
	gul (0.177588)
	eye (0.170503)
	cje (0.165235)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	sug (0.127291)
	bla (0.124347)