Non-Coding RNA Search

Ss1.1-rspl18_i10.5

Sequence:


               
               CTGCACAGAATGGGCTTGCAAGTAGCTTGCCAGCTGAGGTACACAGCCACACCCACAACC
CCTCGGAGCAAACCTCCCAGCCTGTACAAGCGCTGCCAGAGCTCCTGGCCCCCCTCCACC
CCGTAGCACCCCCCACCTCTCCCCCCCAACCCCTCCAGAATCACAAGTACAACACCAGTT
CTACCTCATACTCCCCACTTGCAAGCCTGCCCCTCAAAGCAGATACTAAAGGATTTTGCA
ATACCAATTTGCTTGAGGACTTGCCTCTGCAAGAGCCTCAGTCACCTCACAAGCTCAACC
CAGGTTTCGATCTGGCTAAGGGAGGTGCTGGTAAAGTAAACCTGCCCAAGGAGCTACCTG
CAGACGCTGTGAACCTAACAATACCTGCCTCTTTGGACCTCTCTCCCCTGTTGGGCTTCT
GGCAGCTGCCCCCTCCTGCTACCCAGAATGCTTTTGGGAATAGCACTCTCACCCTGGGGC
CTGGGGAATCTCTGCCCCATAGGTTAAGCTGTCTGGGGCAGCAGCAACAAGATCCCTCAC
TAGCCATGAGCACTATGAGCCTGGGCCAGCTCCCCCTCCCTCCCATCCCCCACGTTTTCC
CAGCTGGCACTGGTTCGGCTATCCTGCCTCATTTCCACCATGCGTTCAGATGACTGGTTT
TTAAAGCATACTTTTCTTAGTCTGGAAGGTGTTTTAAAAAGCATTTGAAACATCAGTTAT
GATACAAGGAAAGATTTGGAAAGCAAGACTGGAATATAGCATATTCAGTGATGACTGGCT
TGAGAGAAGAGAGTTCTCGAACTGCATGTATTGTGCCAATCTGTCCTGAGTGTTCATGCT
TTGTACCAAATTTAATAAGCAAGTATTCTTTAATGGAACTACAACTATTGTCATAACCGA
CATCCATACGAGGGCTGCTATATATAGGTGTTTGTCAAATTGAATTTAATCGTAAGCCAT
GATCATAATAATGTTAACTAAGTAACTTTATGTGGCACTGCCTAGTAAGGGAACTATGGA
AAGGTTTGGATCTCTCCAAAATGGGAGGATTTTTAAAATATGAAAATAACCTTTATATTG
CATATTATTACTAGGCTGTGTATTTCTTTTCAGGGATTTTTCTACCTTCAGGGTTGGATG
TAGTTTAGTTACTATTGCCATAGCCAACCTGTAGTTTTACAGAAACAATTTCTTGTGGAA
TAATAGACGTCTCCATTTTAAAAAAGCATTTTAAATGTAGTTTGAATATTTTCCACAGGA
TGCTACAATGTGAGTTATCACTTCATTTATCTTAAAGACTAAACTGATTGTCAGTTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCACAGAATGGGCTTGCAAGTAGCTTGCCAGCTGAGGTACACAGCCACACCCACAACC
CCTCGGAGCAAACCTCCCAGCCTGTACAAGCGCTGCCAGAGCTCCTGGCCCCCCTCCACC
CCGTAGCACCCCCCACCTCTCCCCCCCAACCCCTCCAGAATCACAAGTACAACACCAGTT
CTACCTCATACTCCCCACTTGCAAGCCTGCCCCTCAAAGCAGATACTAAAGGATTTTGCA
ATACCAATTTGCTTGAGGACTTGCCTCTGCAAGAGCCTCAGTCACCTCACAAGCTCAACC
CAGGTTTCGATCTGGCTAAGGGAGGTGCTGGTAAAGTAAACCTGCCCAAGGAGCTACCTG
CAGACGCTGTGAACCTAACAATACCTGCCTCTTTGGACCTCTCTCCCCTGTTGGGCTTCT
GGCAGCTGCCCCCTCCTGCTACCCAGAATGCTTTTGGGAATAGCACTCTCACCCTGGGGC
CTGGGGAATCTCTGCCCCATAGGTTAAGCTGTCTGGGGCAGCAGCAACAAGATCCCTCAC
TAGCCATGAGCACTATGAGCCTGGGCCAGCTCCCCCTCCCTCCCATCCCCCACGTTTTCC
CAGCTGGCACTGGTTCGGCTATCCTGCCTCATTTCCACCATGCGTTCAGATGACTGGTTT
TTAAAGCATACTTTTCTTAGTCTGGAAGGTGTTTTAAAAAGCATTTGAAACATCAGTTAT
GATACAAGGAAAGATTTGGAAAGCAAGACTGGAATATAGCATATTCAGTGATGACTGGCT
TGAGAGAAGAGAGTTCTCGAACTGCATGTATTGTGCCAATCTGTCCTGAGTGTTCATGCT
TTGTACCAAATTTAATAAGCAAGTATTCTTTAATGGAACTACAACTATTGTCATAACCGA
CATCCATACGAGGGCTGCTATATATAGGTGTTTGTCAAATTGAATTTAATCGTAAGCCAT
GATCATAATAATGTTAACTAAGTAACTTTATGTGGCACTGCCTAGTAAGGGAACTATGGA
AAGGTTTGGATCTCTCCAAAATGGGAGGATTTTTAAAATATGAAAATAACCTTTATATTG
CATATTATTACTAGGCTGTGTATTTCTTTTCAGGGATTTTTCTACCTTCAGGGTTGGATG
TAGTTTAGTTACTATTGCCATAGCCAACCTGTAGTTTTACAGAAACAATTTCTTGTGGAA
TAATAGACGTCTCCATTTTAAAAAAGCATTTTAAATGTAGTTTGAATATTTTCCACAGGA
TGCTACAATGTGAGTTATCACTTCATTTATCTTAAAGACTAAACTGATTGTCAGTTACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51476386|emb|CAH18183.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51476386|emb|CAH18183.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-92, - strand, RNAz p=0.88482
               

               
               173-650, - strand, RNAz p=0.86755
               

               
               975-1078, - strand, RNAz p=0.59916

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-92, - strand, RNAz p=0.88482
               

               
               173-650, - strand, RNAz p=0.86755
               

               
               975-1078, - strand, RNAz p=0.59916

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1306, gnl|bosTau2|chr9 (47784393-47785704)
               

               
               1-1306, gnl|Hg17|chr6 (144304906-144303591)
               

               
               1-1306, gnl|Mm7|chr10 (12828092-12830199)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1306, gnl|bosTau2|chr9 (47784393-47785704)
               

               
               1-1306, gnl|Hg17|chr6 (144304906-144303591)
               

               
               1-1306, gnl|Mm7|chr10 (12828092-12830199)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               clu (0.358938)
               

               
               thg (0.253582)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               thg (0.253582)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	1-92, - strand, RNAz p=0.88482
	173-650, - strand, RNAz p=0.86755
	975-1078, - strand, RNAz p=0.59916

	1-1306, gnl\|bosTau2\|chr9 (47784393-47785704)
	1-1306, gnl\|Hg17\|chr6 (144304906-144303591)
	1-1306, gnl\|Mm7\|chr10 (12828092-12830199)

	clu (0.358938)
	thg (0.253582)
	rec (0.17307)
	spl (0.143184)
	pla (0.133672)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)