Non-Coding RNA Search

Ss1.1-rspl18_m14.5

Sequence:


               
               TACAACTCTTCTAGGAGAGTAAAAGGCTTCCCTGCCTGATGAACAAGGCACAGGCCACCT
TCCAACCCCACTTGCCTTTCAAAAGCCACAGTGGCAAAGGGCGGGCCCGCTGTGATGGGA
CTTCCTTAGAGGCTGCTTGGGGGTGTGGCTCCGAACAATAACTTTGGTTTCTGCTTCACC
AAAATGCAGTTGATTTTACCCTGTAAAGGCCCCTGAGGCACTAGAGAAAAGCTGGGAGAT
GAGCTTTTCCAGCCAAAAGCTGACTTTTCCTTCCACGTTAAGCCAGGCTGGCAGAGGCCC
CGGTGAGGCCCCAGGCTGGCTAGGTAGCATGGGGGAGTCTTTAGTGGTTTCTGTTGTCGT
TCTAGTTAGGTGGTCTCCAAGCTCTTTTGACCATGTACCCCCTCAACAGAAAATATTTGA
GCATACACCCGCCCAAACTAGGTATATTTATTTATTTATAAATTATATATCATAAAACAT
ACGCAGGACAGAAATTGATCGATGAGGAGATACAAACCAATACAAGGAGATATTCTCAAG
TGTGCTTTCAGGTCTGGAGACCTCCGGCCCAGTTTCCCAGCAGGTGATACCTGTACCAAT
GTTATATGTATTTGGTCCCATCGCTCCCATAAATTTCCTTGAGCTCTTGAAGCCACGCTG
CTAAATCAGTGGTTTGGAAACTCTAGTCACCACAGTGAGAGTTTAGGCTTTCCCAGCATC
TGTGTCTCTTCTGTTACTCCTTTTTTTTTCCTCCCTTTGTTTTCTCCTTTTTGCTCATCT
GCTGTGTTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAACTCTTCTAGGAGAGTAAAAGGCTTCCCTGCCTGATGAACAAGGCACAGGCCACCT
TCCAACCCCACTTGCCTTTCAAAAGCCACAGTGGCAAAGGGCGGGCCCGCTGTGATGGGA
CTTCCTTAGAGGCTGCTTGGGGGTGTGGCTCCGAACAATAACTTTGGTTTCTGCTTCACC
AAAATGCAGTTGATTTTACCCTGTAAAGGCCCCTGAGGCACTAGAGAAAAGCTGGGAGAT
GAGCTTTTCCAGCCAAAAGCTGACTTTTCCTTCCACGTTAAGCCAGGCTGGCAGAGGCCC
CGGTGAGGCCCCAGGCTGGCTAGGTAGCATGGGGGAGTCTTTAGTGGTTTCTGTTGTCGT
TCTAGTTAGGTGGTCTCCAAGCTCTTTTGACCATGTACCCCCTCAACAGAAAATATTTGA
GCATACACCCGCCCAAACTAGGTATATTTATTTATTTATAAATTATATATCATAAAACAT
ACGCAGGACAGAAATTGATCGATGAGGAGATACAAACCAATACAAGGAGATATTCTCAAG
TGTGCTTTCAGGTCTGGAGACCTCCGGCCCAGTTTCCCAGCAGGTGATACCTGTACCAAT
GTTATATGTATTTGGTCCCATCGCTCCCATAAATTTCCTTGAGCTCTTGAAGCCACGCTG
CTAAATCAGTGGTTTGGAAACTCTAGTCACCACAGTGAGAGTTTAGGCTTTCCCAGCATC
TGTGTCTCTTCTGTTACTCCTTTTTTTTTCCTCCCTTTGTTTTCTCCTTTTTGCTCATCT
GCTGTGTTTCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               234-349, + strand, RNAz p=0.919943

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-349, + strand, RNAz p=0.919943

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               157-426, gnl|bosTau2|chr11 (47600723-47600986)
               

               
               157-426, gnl|Hg17|chr2 (68965920-68966188)
               


               
               449-768, gnl|bosTau2|chr11 (47601267-47601586)
               

               
               449-768, gnl|Hg17|chr2 (68966237-68966560)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-426, gnl|bosTau2|chr11 (47600723-47600986)
               

               
               157-426, gnl|Hg17|chr2 (68965920-68966188)
               


               
               449-768, gnl|bosTau2|chr11 (47601267-47601586)
               

               
               449-768, gnl|Hg17|chr2 (68966237-68966560)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               spl (0.286369)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)

	157-426, gnl\|bosTau2\|chr11 (47600723-47600986)
	157-426, gnl\|Hg17\|chr2 (68965920-68966188)

	449-768, gnl\|bosTau2\|chr11 (47601267-47601586)
	449-768, gnl\|Hg17\|chr2 (68966237-68966560)

	spl (0.286369)
	fty (0.17584)
	ton (0.1755)
	csp (0.161186)
	tbr (0.154178)
	lnt (0.142308)