Non-Coding RNA Search

Ss1.1-rspl19_e5.5

Sequence:


               
               CCGCCGGCCGCCCCAGGAGCATTTCCGACGGCCGCCTCAGGAGCATTTCAGACGGCCGCC
TCAGGAGCATTTCAGGCGGCCACCCCAGGAGCATTTTAGGCGCCCCCGAGAGGAAGATTT
TAGGCACCCACTGGATGAAGATTTCAGGGGCCCTCCCAATGAAGACTTTGGGCACCCTCC
TGATGAGGACTTCAGGAGTCCCCAGGAGGAAGATTTTAGATGCCCTTCTGATGAGGACTT
CAGGCGGCTCCCAGAGGAAGACCTCAGGGAAGCTCCGGAGGAGGACCCTAGACTTCCCGA
CAATTTTAGACTTTCTGGTGAGCAGTTTAGGAGCCCCCCTGATGATTTCAGAAGTCATCG
CCCTTTTGTGAATTTTGGTCGCCCAGAAGGTGGCAAGTTTGATTTTGGAAAGCGTAATAT
GGGAAGTTTTCCTGAGGGGAGATTTATGCCTGATCCGAAACTAAATTGTAATTCAGGTAG
AGTAATACCCATTAAGATAATGAATCTTCCATTTAAAGCTAATGTTAATGAAATTCTAGA
CTTTTTCCATGGTTATAGAGTCATACCTGACTCAGTTTCAATACAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCGGCCGCCCCAGGAGCATTTCCGACGGCCGCCTCAGGAGCATTTCAGACGGCCGCC
TCAGGAGCATTTCAGGCGGCCACCCCAGGAGCATTTTAGGCGCCCCCGAGAGGAAGATTT
TAGGCACCCACTGGATGAAGATTTCAGGGGCCCTCCCAATGAAGACTTTGGGCACCCTCC
TGATGAGGACTTCAGGAGTCCCCAGGAGGAAGATTTTAGATGCCCTTCTGATGAGGACTT
CAGGCGGCTCCCAGAGGAAGACCTCAGGGAAGCTCCGGAGGAGGACCCTAGACTTCCCGA
CAATTTTAGACTTTCTGGTGAGCAGTTTAGGAGCCCCCCTGATGATTTCAGAAGTCATCG
CCCTTTTGTGAATTTTGGTCGCCCAGAAGGTGGCAAGTTTGATTTTGGAAAGCGTAATAT
GGGAAGTTTTCCTGAGGGGAGATTTATGCCTGATCCGAAACTAAATTGTAATTCAGGTAG
AGTAATACCCATTAAGATAATGAATCTTCCATTTAAAGCTAATGTTAATGAAATTCTAGA
CTTTTTCCATGGTTATAGAGTCATACCTGACTCAGTTTCAATACAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20988500|gb|AAH30408.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20988500|gb|AAH30408.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.986253
               

               
               160-359, + strand, RNAz p=0.958585

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.986253
               

               
               160-359, + strand, RNAz p=0.958585

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-588, gnl|bosTau2|chr14 (43819883-43820467)
               

               
               1-588, gnl|Hg17|chr8 (94815526-94814939)
               

               
               1-588, gnl|Mm7|chr4 (12073029-12073557)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr14 (43819883-43820467)
               

               
               1-588, gnl|Hg17|chr8 (94815526-94814939)
               

               
               1-588, gnl|Mm7|chr4 (12073029-12073557)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)

	1-119, - strand, RNAz p=0.986253
	160-359, + strand, RNAz p=0.958585

	1-588, gnl\|bosTau2\|chr14 (43819883-43820467)
	1-588, gnl\|Hg17\|chr8 (94815526-94814939)
	1-588, gnl\|Mm7\|chr4 (12073029-12073557)