Non-Coding RNA Search

Ss1.1-rspl19_p2.5

Sequence:


               
               GAGTGAAGTTTTGCCCCTTGAACTTGGATGCATTAATGATCATGAGTCTGTTGTTGACAT
TGGCATGAAATTTTACTTTATATTTTTGAAGACAGTTTTGTAAATAATAAAAACAATGAT
TGATATAGAAATCTTGGAAAACGCAGAAAGGTATGACAGAAACCCTCTTTGAAAGTTTTG
ATTGATGATCTTACCACCCAGAAATCACCACTGTTAACATTTTACTGTCTTCCAGTCATT
TATAATGCTGAGTAGTTCTTAAATGATGCTATTGCTTACATGGTGTTGGAAGTATATTCT
CATCTCAATAAATACTGCATTTGTTTTTCATGGGTTCTTATTTCTTACTGTTGGACATTT
AGATTGTTTCCAGATTTTTACTGTTATAAATGTTTCTCATAAATAGCCTTGTAATACTCG
TTGATGAATGTCTGTTTAGTTGTTTGGGACCAGTTCCTGGAGACAGAATTATCAGAGGGC
CTTGATACAGATGTCAGATTGCCCTCAAGAGGTTATACCAATTTCTGCTACCAGAAATAT
TTGAATACCCATTGTTCCAAAAGTCTTCCTTGAACTTGGTTTTCATATTTTACTTTGCTG
ATGAATCTAGAGAATCCTATGCCTTAGCCAGTGCTGGCTCCTTGACCTGCTGAAGGCAAA
GAGAGCTTGGTAATGAGTTGTTCCAGCTTTGCTTTGCCCTATCCCAATGAGGGAGAGAAG
GCAGAGTTCTCTCGGGCGGCCTGGTCCTCTTCCCCAAGAGCCTTAGGTAGGTTGAGGGGG
TTGCCTGCTGAGTGTGTGAGCACGGTGGGCAGAGAGTACCCAGCACACCAAGTGATAAAA
ATAGCTGTGTCAATCTGGCGGTGAAAGCAAGAGGGTTTAATTGATCTATGGCAACAGGAA
GTTGACATCTTAAATTATTTTTTGTTGTATCCTAATTTAGCATCACTCTGACAAAGGAAC
TGTACGGGGGAATTCATGGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGAAGTTTTGCCCCTTGAACTTGGATGCATTAATGATCATGAGTCTGTTGTTGACAT
TGGCATGAAATTTTACTTTATATTTTTGAAGACAGTTTTGTAAATAATAAAAACAATGAT
TGATATAGAAATCTTGGAAAACGCAGAAAGGTATGACAGAAACCCTCTTTGAAAGTTTTG
ATTGATGATCTTACCACCCAGAAATCACCACTGTTAACATTTTACTGTCTTCCAGTCATT
TATAATGCTGAGTAGTTCTTAAATGATGCTATTGCTTACATGGTGTTGGAAGTATATTCT
CATCTCAATAAATACTGCATTTGTTTTTCATGGGTTCTTATTTCTTACTGTTGGACATTT
AGATTGTTTCCAGATTTTTACTGTTATAAATGTTTCTCATAAATAGCCTTGTAATACTCG
TTGATGAATGTCTGTTTAGTTGTTTGGGACCAGTTCCTGGAGACAGAATTATCAGAGGGC
CTTGATACAGATGTCAGATTGCCCTCAAGAGGTTATACCAATTTCTGCTACCAGAAATAT
TTGAATACCCATTGTTCCAAAAGTCTTCCTTGAACTTGGTTTTCATATTTTACTTTGCTG
ATGAATCTAGAGAATCCTATGCCTTAGCCAGTGCTGGCTCCTTGACCTGCTGAAGGCAAA
GAGAGCTTGGTAATGAGTTGTTCCAGCTTTGCTTTGCCCTATCCCAATGAGGGAGAGAAG
GCAGAGTTCTCTCGGGCGGCCTGGTCCTCTTCCCCAAGAGCCTTAGGTAGGTTGAGGGGG
TTGCCTGCTGAGTGTGTGAGCACGGTGGGCAGAGAGTACCCAGCACACCAAGTGATAAAA
ATAGCTGTGTCAATCTGGCGGTGAAAGCAAGAGGGTTTAATTGATCTATGGCAACAGGAA
GTTGACATCTTAAATTATTTTTTGTTGTATCCTAATTTAGCATCACTCTGACAAAGGAAC
TGTACGGGGGAATTCATGGGAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-346, gnl|bosTau2|chr6 (36174566-36174214)
               

               
               1-346, gnl|Hg17|chr10 (76874366-76874725)
               

               
               1-346, gnl|Mm7|chr14 (19690789-19691089)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-346, gnl|bosTau2|chr6 (36174566-36174214)
               

               
               1-346, gnl|Hg17|chr10 (76874366-76874725)
               

               
               1-346, gnl|Mm7|chr14 (19690789-19691089)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-346, gnl\|bosTau2\|chr6 (36174566-36174214)
	1-346, gnl\|Hg17\|chr10 (76874366-76874725)
	1-346, gnl\|Mm7\|chr14 (19690789-19691089)