Non-Coding RNA Search

Ss1.1-rspl20_l2.5

Sequence:


               
               ATTGGGGAAGAGGAAGATGCAGCTGCACATCTAGCACAAGCTCTAGTCACTGTGGATGAA
GTAATTGATGATGAAGAAATAAATATGGAAGAGATGGTAAAAAACTCAAATTCACTTCTT
ACATTAGATGAGTTAATTGATCAAGATGATTGCATTTCCCATAGCGAACCTAAAGATGTT
ACTGTACTGTCAGTGGCTGAAGAGCAAGATCTTCTCAAACAGGAACGCTTGGTAACTGTG
GATGAAATCGGAGAAGTAGAAGAACTACCTTTAAATGAGGCAGCAGACATAAATTTTGCC
ACTTTAAATGCTAAAGGAGATGAGGGAAATACTGGAAGGGATTCCATTGGGTTCATTTCT
TCTCAGATGCCTGAAGACCCTTCTACTTTAGTTACTGTAGATGAAATTCAGGATGACAGT
AGTGATTTGCATTTAGTGACCTTAGATGAAGTAACTGAAGAGGATGAAGACTCATTGGCA
GATTTTAACAACCTTAAGGAAGAGCTTAATTTTGTTACTGTTGATGAAGTTGGAGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGGGGAAGAGGAAGATGCAGCTGCACATCTAGCACAAGCTCTAGTCACTGTGGATGAA
GTAATTGATGATGAAGAAATAAATATGGAAGAGATGGTAAAAAACTCAAATTCACTTCTT
ACATTAGATGAGTTAATTGATCAAGATGATTGCATTTCCCATAGCGAACCTAAAGATGTT
ACTGTACTGTCAGTGGCTGAAGAGCAAGATCTTCTCAAACAGGAACGCTTGGTAACTGTG
GATGAAATCGGAGAAGTAGAAGAACTACCTTTAAATGAGGCAGCAGACATAAATTTTGCC
ACTTTAAATGCTAAAGGAGATGAGGGAAATACTGGAAGGGATTCCATTGGGTTCATTTCT
TCTCAGATGCCTGAAGACCCTTCTACTTTAGTTACTGTAGATGAAATTCAGGATGACAGT
AGTGATTTGCATTTAGTGACCTTAGATGAAGTAACTGAAGAGGATGAAGACTCATTGGCA
GATTTTAACAACCTTAAGGAAGAGCTTAATTTTGTTACTGTTGATGAAGTTGGAGAGGAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-539, gnl|bosTau2|chr11 (10282791-10283329)
               

               
               1-539, gnl|Hg17|chr2 (71565464-71566002)
               

               
               1-539, gnl|Mm7|chr6 (84004809-84005308)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-539, gnl|bosTau2|chr11 (10282791-10283329)
               

               
               1-539, gnl|Hg17|chr2 (71565464-71566002)
               

               
               1-539, gnl|Mm7|chr6 (84004809-84005308)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spl (0.286369)
               

               
               ste (0.270416)
               

               
               cmu (0.186393)
               

               
               lun (0.150489)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               ste (0.270416)
               

               
               cmu (0.186393)
               

               
               lun (0.150489)

	1-539, gnl\|bosTau2\|chr11 (10282791-10283329)
	1-539, gnl\|Hg17\|chr2 (71565464-71566002)
	1-539, gnl\|Mm7\|chr6 (84004809-84005308)