Non-Coding RNA Search

Ss1.1-rspl22_b5.5

Sequence:


               
               CAAAAGCAGGTTTTGATACAGAGCAGGAACCAAGAAATAATTGTGGGTGGCAGCCTTGGT
GTAGAGATGTCTTGTCTTCATGAATGGCATTACCTGCCAGGTTTAGGTGCTACAAGGCAT
TGGCTCCTGGCTTTGATACAGACTTATGGCAAACTGTAGTATTTGGGAGGAGGGGGCCTG
CTGATCTCTCAAAAGATGATCATGATGTCTACTATTGGAAGGGTCAAGCAACATTTTGAT
TTTGATCTTGAATGTCCAGTCTCATGGGTTGGATTTTGGGCCCCTGAAATCAGGCATATG
TGGTTTTGGTTTTTGCATGGGGATTACTGTAATGCTTATTAATGAAAATGAAATCATTCA
ACCATCTGAAGTCAAACACGAAAATAATAATAATAAAAGAAACATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAGCAGGTTTTGATACAGAGCAGGAACCAAGAAATAATTGTGGGTGGCAGCCTTGGT
GTAGAGATGTCTTGTCTTCATGAATGGCATTACCTGCCAGGTTTAGGTGCTACAAGGCAT
TGGCTCCTGGCTTTGATACAGACTTATGGCAAACTGTAGTATTTGGGAGGAGGGGGCCTG
CTGATCTCTCAAAAGATGATCATGATGTCTACTATTGGAAGGGTCAAGCAACATTTTGAT
TTTGATCTTGAATGTCCAGTCTCATGGGTTGGATTTTGGGCCCCTGAAATCAGGCATATG
TGGTTTTGGTTTTTGCATGGGGATTACTGTAATGCTTATTAATGAAAATGAAATCATTCA
ACCATCTGAAGTCAAACACGAAAATAATAATAATAAAAGAAACATACT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               122-408, gnl|bosTau2|chr16 (39776176-39775897)
               

               
               122-408, gnl|canFam2|chr7 (25517952-25517621)
               

               
               122-408, gnl|echTel1|scaffold_314909 (33545-33189)
               

               
               122-408, gnl|hg17|chr1 (173778560-173778920)
               

               
               122-408, gnl|loxAfr1|scaffold_8905 (32215-31860)
               

               
               122-408, gnl|mm7|chr1 (158415986-158415635)
               

               
               122-408, gnl|oryCun1|scaffold_210212 (50681-51030)
               

               
               122-408, gnl|panTro1|chr1_random (33290475-33290835)
               

               
               122-408, gnl|rheMac2|chr1 (206672043-206672401)
               

               
               122-408, gnl|rn3|chr13 (73759175-73758826)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-408, gnl|bosTau2|chr16 (39776176-39775897)
               

               
               122-408, gnl|canFam2|chr7 (25517952-25517621)
               

               
               122-408, gnl|echTel1|scaffold_314909 (33545-33189)
               

               
               122-408, gnl|hg17|chr1 (173778560-173778920)
               

               
               122-408, gnl|loxAfr1|scaffold_8905 (32215-31860)
               

               
               122-408, gnl|mm7|chr1 (158415986-158415635)
               

               
               122-408, gnl|oryCun1|scaffold_210212 (50681-51030)
               

               
               122-408, gnl|panTro1|chr1_random (33290475-33290835)
               

               
               122-408, gnl|rheMac2|chr1 (206672043-206672401)
               

               
               122-408, gnl|rn3|chr13 (73759175-73758826)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               col (0.195008)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)

	122-408, gnl\|bosTau2\|chr16 (39776176-39775897)
	122-408, gnl\|canFam2\|chr7 (25517952-25517621)
	122-408, gnl\|echTel1\|scaffold_314909 (33545-33189)
	122-408, gnl\|hg17\|chr1 (173778560-173778920)
	122-408, gnl\|loxAfr1\|scaffold_8905 (32215-31860)
	122-408, gnl\|mm7\|chr1 (158415986-158415635)
	122-408, gnl\|oryCun1\|scaffold_210212 (50681-51030)
	122-408, gnl\|panTro1\|chr1_random (33290475-33290835)
	122-408, gnl\|rheMac2\|chr1 (206672043-206672401)
	122-408, gnl\|rn3\|chr13 (73759175-73758826)

	fce (0.271592)
	col (0.195008)
	nje (0.16592)
	spl (0.143184)
	hyp (0.142837)