Non-Coding RNA Search

Ss1.1-rspl22_c6.5

Sequence:


               
               AGAAGGCTAGATATGGATGCCGAGATTGATTGTTGGTTGACAGTTCACTTTGTTGCATTA
GAAACGAGGCACCAAAGCCAGCACAGTCAGGATAATGGCCCCTCAGGCTAGAGCAGCCTC
CATGGGAAAGGAACAAGGGTTTCCATGGAGACAGTCTCACAGGAGCTTCCCTGGACCAAT
ATCATTGAAGAATAGAGGTGTGGCTCAGACCAGCCTATCAGGGCTTGCCTCCTCCCTCTT
ATGAGTTGTTCAAGTTATTGGGGTACTCGTGGTAAGCGGACTCTGGGGAAGGAGGAAGCT
CTATGACACAAATATCTAGTTAATTTGACGTTTCTCTCATTTTTTTTTTTTCTGATGGAT
GTTCACAGATTTTATTCCAGCACCAAGAATTATGACAATTTATTCATAGACTTAGTTGGA
ATCCAAAGACTATGCATTCTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGGCTAGATATGGATGCCGAGATTGATTGTTGGTTGACAGTTCACTTTGTTGCATTA
GAAACGAGGCACCAAAGCCAGCACAGTCAGGATAATGGCCCCTCAGGCTAGAGCAGCCTC
CATGGGAAAGGAACAAGGGTTTCCATGGAGACAGTCTCACAGGAGCTTCCCTGGACCAAT
ATCATTGAAGAATAGAGGTGTGGCTCAGACCAGCCTATCAGGGCTTGCCTCCTCCCTCTT
ATGAGTTGTTCAAGTTATTGGGGTACTCGTGGTAAGCGGACTCTGGGGAAGGAGGAAGCT
CTATGACACAAATATCTAGTTAATTTGACGTTTCTCTCATTTTTTTTTTTTCTGATGGAT
GTTCACAGATTTTATTCCAGCACCAAGAATTATGACAATTTATTCATAGACTTAGTTGGA
ATCCAAAGACTATGCATTCTATTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-191, - strand, RNAz p=0.903542

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-191, - strand, RNAz p=0.903542

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-443, gnl|bosTau2|chr3 (54064467-54064911)
               

               
               1-443, gnl|canFam2|chr5 (49014660-49013823)
               

               
               1-443, gnl|dasNov1|scaffold_1096 (214165-213324)
               

               
               1-443, gnl|echTel1|scaffold_294817 (38916-38078)
               

               
               1-443, gnl|hg17|chr1 (64357062-64357928)
               

               
               1-443, gnl|Hg17|chr1 (64357283-64357732)
               

               
               1-443, gnl|loxAfr1|scaffold_756 (25503-24612)
               

               
               1-443, gnl|mm7|chr4 (99819170-99820013)
               

               
               1-443, gnl|Mm7|chr4 (99819368-99819825)
               

               
               1-443, gnl|monDom2|scaffold_40 (10719711-10718766)
               

               
               1-443, gnl|panTro1|chr1 (62697418-62698284)
               

               
               1-443, gnl|rheMac2|chr1 (66962340-66963206)
               

               
               1-443, gnl|rn3|chr5 (121103611-121104417)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-443, gnl|bosTau2|chr3 (54064467-54064911)
               

               
               1-443, gnl|canFam2|chr5 (49014660-49013823)
               

               
               1-443, gnl|dasNov1|scaffold_1096 (214165-213324)
               

               
               1-443, gnl|echTel1|scaffold_294817 (38916-38078)
               

               
               1-443, gnl|hg17|chr1 (64357062-64357928)
               

               
               1-443, gnl|Hg17|chr1 (64357283-64357732)
               

               
               1-443, gnl|loxAfr1|scaffold_756 (25503-24612)
               

               
               1-443, gnl|mm7|chr4 (99819170-99820013)
               

               
               1-443, gnl|Mm7|chr4 (99819368-99819825)
               

               
               1-443, gnl|monDom2|scaffold_40 (10719711-10718766)
               

               
               1-443, gnl|panTro1|chr1 (62697418-62698284)
               

               
               1-443, gnl|rheMac2|chr1 (66962340-66963206)
               

               
               1-443, gnl|rn3|chr5 (121103611-121104417)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               jej (0.0989218)

	1-443, gnl\|bosTau2\|chr3 (54064467-54064911)
	1-443, gnl\|canFam2\|chr5 (49014660-49013823)
	1-443, gnl\|dasNov1\|scaffold_1096 (214165-213324)
	1-443, gnl\|echTel1\|scaffold_294817 (38916-38078)
	1-443, gnl\|hg17\|chr1 (64357062-64357928)
	1-443, gnl\|Hg17\|chr1 (64357283-64357732)
	1-443, gnl\|loxAfr1\|scaffold_756 (25503-24612)
	1-443, gnl\|mm7\|chr4 (99819170-99820013)
	1-443, gnl\|Mm7\|chr4 (99819368-99819825)
	1-443, gnl\|monDom2\|scaffold_40 (10719711-10718766)
	1-443, gnl\|panTro1\|chr1 (62697418-62698284)
	1-443, gnl\|rheMac2\|chr1 (66962340-66963206)
	1-443, gnl\|rn3\|chr5 (121103611-121104417)