Ss1.1-rspl22_g17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCATCCCCGGAGCGGCTGCCTTCGCTGGGGAAGCGGCGGTGTCTTCGAGGAAACCGG AAGCCCGCGGTGACCCCTGGCGACCCGGTTTGTTTTCGATCCATTTCCAAACACTGGGGA ATCGTAACTCGGCGGCCCTAAGGGCGGCCCCAAGGAGCCCGGCCTCGCGCTGTCATGGAG GCACTGATAGATGATGATATCTGCATTCTGGATCGTGAAAAAGCCCATAGGAGAGATACA GTGACTCCAGTCTCAATATATTCAGATGAATCTGTTGCTTCACATTTTGCTCTTGTCACT GCATATGAAGACATCAAAAAACGACTTAAGGATTCAGAGAAAGAGAACTCTTTCTTAAAA AAAAGAATAAGATTTTTGGAAGAAAAGCTTTTAGGAGCTCGAAAGGATGAAGAAACAAGT TCTGTGGGACGAGAACAAGTAAATAAGGCCTATCATGCATATCGAGAGGTTTGCATTGAT AGAGATAATTTGAAGAGCAAATTGGATAAAATTAATAAAGACAACTCTGAATCTTTGAAA GTATTGAATGAACAGCTACAATCTAAAGAAGTAGAACTCCTCCAGCTAAGGACGGAGGTG GAAACTCAGCAGGTGATAAGGAATTTAAATCCACCGTCATCAAACTGGGAGGTGGAAAAG TTAAGCTGTGACCTGAAGATCCATGGTTTGGAACAAGAACTGGAACTAATGAAGAAGGAA TGTAGAGATCTCAAAATAGAGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCATCCCCGGAGCGGCTGCCTTCGCTGGGGAAGCGGCGGTGTCTTCGAGGAAACCGG AAGCCCGCGGTGACCCCTGGCGACCCGGTTTGTTTTCGATCCATTTCCAAACACTGGGGA ATCGTAACTCGGCGGCCCTAAGGGCGGCCCCAAGGAGCCCGGCCTCGCGCTGTCATGGAG GCACTGATAGATGATGATATCTGCATTCTGGATCGTGAAAAAGCCCATAGGAGAGATACA GTGACTCCAGTCTCAATATATTCAGATGAATCTGTTGCTTCACATTTTGCTCTTGTCACT GCATATGAAGACATCAAAAAACGACTTAAGGATTCAGAGAAAGAGAACTCTTTCTTAAAA AAAAGAATAAGATTTTTGGAAGAAAAGCTTTTAGGAGCTCGAAAGGATGAAGAAACAAGT TCTGTGGGACGAGAACAAGTAAATAAGGCCTATCATGCATATCGAGAGGTTTGCATTGAT AGAGATAATTTGAAGAGCAAATTGGATAAAATTAATAAAGACAACTCTGAATCTTTGAAA GTATTGAATGAACAGCTACAATCTAAAGAAGTAGAACTCCTCCAGCTAAGGACGGAGGTG GAAACTCAGCAGGTGATAAGGAATTTAAATCCACCGTCATCAAACTGGGAGGTGGAAAAG TTAAGCTGTGACCTGAAGATCCATGGTTTGGAACAAGAACTGGAACTAATGAAGAAGGAA TGTAGAGATCTCAAAATAGAGCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr22 (149666-149808) | |
| 1-143, gnl|Hg17|chr3 (28365264-28365110) | |
| 1-143, gnl|Mm7|chr9 (117722731-117722883) | |
| 169-387, gnl|bosTau2|chr22 (1705-1926) | |
| 169-387, gnl|canFam2|chr23 (18965924-18965709) | |
| 169-387, gnl|danRer3|chr15 (4336141-4335928) | |
| 169-387, gnl|dasNov1|scaffold_3720 (75309-75524) | |
| 169-387, gnl|echTel1|scaffold_258892 (23413-23631) | |
| 169-387, gnl|fr1|chrUn (27531333-27531121) | |
| 169-387, gnl|galGal2|chr2 (37956533-37956776) | |
| 169-387, gnl|hg17|chr3 (28356891-28357107) | |
| 169-387, gnl|Hg17|chr3 (28357118-28356897) | |
| 169-387, gnl|loxAfr1|scaffold_27798 (3301-3086) | |
| 169-387, gnl|mm7|chr9 (117729580-117729364) | |
| 169-387, gnl|Mm7|chr9 (117729351-117729572) | |
| 169-387, gnl|monDom2|scaffold_7 (84123828-84124043) | |
| 169-387, gnl|oryCun1|scaffold_87736 (1542-1326) | |
| 169-387, gnl|panTro1|chr2 (29300202-29300418) | |
| 169-387, gnl|rheMac2|chr2 (170772169-170772385) | |
| 169-387, gnl|rn3|chr8 (122988810-122988594) | |
| 169-387, gnl|tetNig1|chr8 (3753340-3753552) | |
| 169-387, gnl|xenTro1|scaffold_965 (372296-372071) | |
| 613-744, gnl|bosTau2|chr22 (5263-5394) | |
| 613-744, gnl|canFam2|chr23 (18969122-18969272) | |
| 613-744, gnl|dasNov1|scaffold_46432 (1597-1448) | |
| 613-744, gnl|echTel1|scaffold_258892 (19143-18993) | |
| 613-744, gnl|hg17|chr15 (42999592-42999737) | |
| 613-744, gnl|Hg17|chr3 (28353381-28353250) | |
| 613-744, gnl|loxAfr1|scaffold_27798 (6824-6974) | |
| 613-744, gnl|mm7|chr9 (117733291-117733441) | |
| 613-744, gnl|Mm7|chr9 (117733292-117733423) | |
| 613-744, gnl|monDom2|scaffold_11 (51754567-51754444) | |
| 613-744, gnl|oryCun1|scaffold_201326 (11825-11972) | |
| 613-744, gnl|panTro1|chr16 (42938326-42938471) | |
| 613-744, gnl|rheMac2|chr7 (23239290-23239435) | |
| 613-744, gnl|rn3|chr8 (122992304-122992454) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr22 (149666-149808) | |
| 1-143, gnl|Hg17|chr3 (28365264-28365110) | |
| 1-143, gnl|Mm7|chr9 (117722731-117722883) | |
| 169-387, gnl|bosTau2|chr22 (1705-1926) | |
| 169-387, gnl|canFam2|chr23 (18965924-18965709) | |
| 169-387, gnl|danRer3|chr15 (4336141-4335928) | |
| 169-387, gnl|dasNov1|scaffold_3720 (75309-75524) | |
| 169-387, gnl|echTel1|scaffold_258892 (23413-23631) | |
| 169-387, gnl|fr1|chrUn (27531333-27531121) | |
| 169-387, gnl|galGal2|chr2 (37956533-37956776) | |
| 169-387, gnl|hg17|chr3 (28356891-28357107) | |
| 169-387, gnl|Hg17|chr3 (28357118-28356897) | |
| 169-387, gnl|loxAfr1|scaffold_27798 (3301-3086) | |
| 169-387, gnl|mm7|chr9 (117729580-117729364) | |
| 169-387, gnl|Mm7|chr9 (117729351-117729572) | |
| 169-387, gnl|monDom2|scaffold_7 (84123828-84124043) | |
| 169-387, gnl|oryCun1|scaffold_87736 (1542-1326) | |
| 169-387, gnl|panTro1|chr2 (29300202-29300418) | |
| 169-387, gnl|rheMac2|chr2 (170772169-170772385) | |
| 169-387, gnl|rn3|chr8 (122988810-122988594) | |
| 169-387, gnl|tetNig1|chr8 (3753340-3753552) | |
| 169-387, gnl|xenTro1|scaffold_965 (372296-372071) | |
| 613-744, gnl|bosTau2|chr22 (5263-5394) | |
| 613-744, gnl|canFam2|chr23 (18969122-18969272) | |
| 613-744, gnl|dasNov1|scaffold_46432 (1597-1448) | |
| 613-744, gnl|echTel1|scaffold_258892 (19143-18993) | |
| 613-744, gnl|hg17|chr15 (42999592-42999737) | |
| 613-744, gnl|Hg17|chr3 (28353381-28353250) | |
| 613-744, gnl|loxAfr1|scaffold_27798 (6824-6974) | |
| 613-744, gnl|mm7|chr9 (117733291-117733441) | |
| 613-744, gnl|Mm7|chr9 (117733292-117733423) | |
| 613-744, gnl|monDom2|scaffold_11 (51754567-51754444) | |
| 613-744, gnl|oryCun1|scaffold_201326 (11825-11972) | |
| 613-744, gnl|panTro1|chr16 (42938326-42938471) | |
| 613-744, gnl|rheMac2|chr7 (23239290-23239435) | |
| 613-744, gnl|rn3|chr8 (122992304-122992454) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| cki (0.165235) | |
| spl (0.143184) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| cki (0.165235) | |
| spl (0.143184) | |
| pgl (0.118483) | |
| cty (0.10408) |