Non-Coding RNA Search

Ss1.1-rspl22_i15.5

Sequence:


               
               CTGGAACAGGTATCCCAGAGGGCATTTCATTCCCTCCCTAGGCTTCAGGTGCTAAATATG
AGTCACAACAGACTCTTGTTCTTGGATACACTTCCTTATAAACCACTCCACTCCCTCAGG
ATTCTGGATTGCAGTTACAATCTTATCGTGGCCTCCAAGGAACAAGAACTACAGCATCTG
CCAAGGAGCCTAGCTTTTTTAAATCTCACTAAGAATGACTTTTCTTGTGCGTGTGAACAC
CAGACTTTCTTGCAGTGGGTCAAGGACCAGAAGCAGCTCCTTGTGGGAGCTGAGCAAATG
GTGTGTACACAACCTTTAGAAATGCAGGACCTGCCTGTGCTGAGTTTCAGGAACGCCACC
TGTCAGATAAGCGAGGCCGTCATTAGTGCGTCAGTTCTCACCTTCCTCCTGGTATCTGTG
GCAGGAATCCTGGTCTATAAGTTCTATTTCCACTTGTTGCTTTTTGTGGGCTGCAAAAAA
TATGGCAGAGGTGAAAGCACCTATGACGCCTTTGTTATCTACTCCAGCCAGGACGAAGAC
TGGGTGAGGAATGAACTGGTAAAGAACTTGGAGGAGGGGGTGCCCCCTTTTCATCTCTGC
CTTCACTACAGAGACTTCATTCCCGGTGTGGCCATCGCTGCTAACATCATCCAGGAAGGT
TTCCACAAAAGTCGGAAGGTTATTGTCGTGGTGTCCCAGCACTTCATACAGAGCCGATGG
TGTATCTTTGAGTATGAGATTGCCCAGACCTGGCAGTTTCTGAGGAGTCATGCCGGCATC
ATCTTCATCGTCCTGCAGAAGTTGGAGAAGTCCCTGCTGCGGCAGCAGGTGGAGCTGTAT
CGCCTTCTCAGCAGGAATACCTACCTGGAGTGGGAGGACAGCGTCCTGGGGCGGCACATC
TTCTGGAGACGACTCAAGAAAGCCTTGCTGGATGGTAAACCATGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAACAGGTATCCCAGAGGGCATTTCATTCCCTCCCTAGGCTTCAGGTGCTAAATATG
AGTCACAACAGACTCTTGTTCTTGGATACACTTCCTTATAAACCACTCCACTCCCTCAGG
ATTCTGGATTGCAGTTACAATCTTATCGTGGCCTCCAAGGAACAAGAACTACAGCATCTG
CCAAGGAGCCTAGCTTTTTTAAATCTCACTAAGAATGACTTTTCTTGTGCGTGTGAACAC
CAGACTTTCTTGCAGTGGGTCAAGGACCAGAAGCAGCTCCTTGTGGGAGCTGAGCAAATG
GTGTGTACACAACCTTTAGAAATGCAGGACCTGCCTGTGCTGAGTTTCAGGAACGCCACC
TGTCAGATAAGCGAGGCCGTCATTAGTGCGTCAGTTCTCACCTTCCTCCTGGTATCTGTG
GCAGGAATCCTGGTCTATAAGTTCTATTTCCACTTGTTGCTTTTTGTGGGCTGCAAAAAA
TATGGCAGAGGTGAAAGCACCTATGACGCCTTTGTTATCTACTCCAGCCAGGACGAAGAC
TGGGTGAGGAATGAACTGGTAAAGAACTTGGAGGAGGGGGTGCCCCCTTTTCATCTCTGC
CTTCACTACAGAGACTTCATTCCCGGTGTGGCCATCGCTGCTAACATCATCCAGGAAGGT
TTCCACAAAAGTCGGAAGGTTATTGTCGTGGTGTCCCAGCACTTCATACAGAGCCGATGG
TGTATCTTTGAGTATGAGATTGCCCAGACCTGGCAGTTTCTGAGGAGTCATGCCGGCATC
ATCTTCATCGTCCTGCAGAAGTTGGAGAAGTCCCTGCTGCGGCAGCAGGTGGAGCTGTAT
CGCCTTCTCAGCAGGAATACCTACCTGGAGTGGGAGGACAGCGTCCTGGGGCGGCACATC
TTCTGGAGACGACTCAAGAAAGCCTTGCTGGATGGTAAACCATGGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5MXI9_MACMU

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5MXI9_MACMU

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               440-559, - strand, RNAz p=0.95421
               

               
               800-919, + strand, RNAz p=0.699974

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-559, - strand, RNAz p=0.95421
               

               
               800-919, + strand, RNAz p=0.699974

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-948, gnl|bosTau2|chr8 (59711526-59710579)
               

               
               1-948, gnl|Hg17|chr9 (117555482-117556426)
               

               
               1-948, gnl|Mm7|chr4 (66274185-66275129)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chr8 (59711526-59710579)
               

               
               1-948, gnl|Hg17|chr9 (117555482-117556426)
               

               
               1-948, gnl|Mm7|chr4 (66274185-66275129)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)

	440-559, - strand, RNAz p=0.95421
	800-919, + strand, RNAz p=0.699974

	1-948, gnl\|bosTau2\|chr8 (59711526-59710579)
	1-948, gnl\|Hg17\|chr9 (117555482-117556426)
	1-948, gnl\|Mm7\|chr4 (66274185-66275129)