Non-Coding RNA Search

Ss1.1-rspl23_e8.5

Sequence:


               
               GCTCAGAATATGGACAAACAAGAGTGAATGATAAGGGAATAACTTTCACTCTTGTTTGTC
CATATTGTGAGGAAATGGTAATTACTAAATGTTGCTCAGAATAATTAAACATGAACATTT
GGTGCTGGTTTTTAAAAACCTACACTTACAGCCATTTTTAAAGTAACATGCTTTTCTCCT
CTATTCATTGCCTGGGAGAATGGAATTTGATATAATTACCTTTCTTTGCAAAAATAACAA
TGTTGAGTGGCTGGTGATGTGGGCATTCCGTCATTCATTGGTATCTAGTATATGCTTAGA
AATAATTGGTCAGGTGGTGATTTTGCCAGTCAAGTTGCAACGAATGCTTGTTTTTCTCTT
TTAAAAATATCCTTGAGAAGCAGGGGTGAATAGAAATTGTTAGTTTTGGGTGCTTCTTTG
TAGTTTTTCCTACTGCAATGGAATTTAGCAGTTCTTTTAAATATGGATCCAGATATACCC
ATCATCATTTATCTTAGAGTGGGTAAAACTGCTGCTTTTTTGGGCGATGGGTGGGGGTTG
CTTAGGCTTGATAGAATATGTATTCTGTGAAGTTTGTTAATGTGCGTGTTAGATTGTATT
GGATTTTTTCCCTCTGGAATTGCAAATGGTTTTGTTAGATGGGTTATTTCCAACTTAATA
CTTAAGGAGAAAATAATCTAGAGTAAGTGTGTTTAATTCTCCATGAAAGCGTAAGGGTCA
GAAATTGGTAAATTGTAAAGGGGAGAGATATCTACCATATTTTTATAAGAGCATATTATT
CATCTGATTCCTATCTAAACGCTTACCAAAATTTCTACAGGTTGACTAAAATGTTCATAG
GCATGGCAGTTCAGTTATAGGAAGTACCTTGTTCCTGGCTTTGTAGTAGACAGTTATCCT
CCACCACAGCTGCATATAAGAGGAGATCTTCTGTTGTCTACTCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGAATATGGACAAACAAGAGTGAATGATAAGGGAATAACTTTCACTCTTGTTTGTC
CATATTGTGAGGAAATGGTAATTACTAAATGTTGCTCAGAATAATTAAACATGAACATTT
GGTGCTGGTTTTTAAAAACCTACACTTACAGCCATTTTTAAAGTAACATGCTTTTCTCCT
CTATTCATTGCCTGGGAGAATGGAATTTGATATAATTACCTTTCTTTGCAAAAATAACAA
TGTTGAGTGGCTGGTGATGTGGGCATTCCGTCATTCATTGGTATCTAGTATATGCTTAGA
AATAATTGGTCAGGTGGTGATTTTGCCAGTCAAGTTGCAACGAATGCTTGTTTTTCTCTT
TTAAAAATATCCTTGAGAAGCAGGGGTGAATAGAAATTGTTAGTTTTGGGTGCTTCTTTG
TAGTTTTTCCTACTGCAATGGAATTTAGCAGTTCTTTTAAATATGGATCCAGATATACCC
ATCATCATTTATCTTAGAGTGGGTAAAACTGCTGCTTTTTTGGGCGATGGGTGGGGGTTG
CTTAGGCTTGATAGAATATGTATTCTGTGAAGTTTGTTAATGTGCGTGTTAGATTGTATT
GGATTTTTTCCCTCTGGAATTGCAAATGGTTTTGTTAGATGGGTTATTTCCAACTTAATA
CTTAAGGAGAAAATAATCTAGAGTAAGTGTGTTTAATTCTCCATGAAAGCGTAAGGGTCA
GAAATTGGTAAATTGTAAAGGGGAGAGATATCTACCATATTTTTATAAGAGCATATTATT
CATCTGATTCCTATCTAAACGCTTACCAAAATTTCTACAGGTTGACTAAAATGTTCATAG
GCATGGCAGTTCAGTTATAGGAAGTACCTTGTTCCTGGCTTTGTAGTAGACAGTTATCCT
CCACCACAGCTGCATATAAGAGGAGATCTTCTGTTGTCTACTCTTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               40-946, gnl|bosTau2|chr1 (84573879-84574808)
               

               
               40-946, gnl|Hg17|chr3 (144259542-144260462)
               

               
               40-946, gnl|Mm7|chr9 (95105741-95104815)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-946, gnl|bosTau2|chr1 (84573879-84574808)
               

               
               40-946, gnl|Hg17|chr3 (144259542-144260462)
               

               
               40-946, gnl|Mm7|chr9 (95105741-95104815)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               spl (0.143184)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ecc (0.115035)

	40-946, gnl\|bosTau2\|chr1 (84573879-84574808)
	40-946, gnl\|Hg17\|chr3 (144259542-144260462)
	40-946, gnl\|Mm7\|chr9 (95105741-95104815)